Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0300 ATGGGCTGCCTCCCATACATGCTGGTCAGCTTCCCAGACGTCGCGGCCCAAACTGATAGCATTGGCTGCGCCGAGCCTTTTAATCAGATATCTCAATACTTCAATTCCAAGTTGAAGGAGGCCGTTCTCCAGCTCAGAAAAGACCTTCCCTCGGCTGCCATCACATACGTGGATGTTTACTCAGTCAAGTACGAGCTATTGAGCCACCCCGAGAAATATGGGTTTGAGCATTCACTTGTAGCTTGCTGTGGCTATGGAGGCAAGTACAACTACAACAATGAAGTGGTCTGTGGAGGTACAATCACTGTTAATGGCACCGATATATTCATCGGAGCGTGTGACCGCCCTTGGGTCCGAGCAAATTGGGATGGAATTCACTACACTGAGGCAGCTAACAAGTTTGTTTTTGATCGAATCTCCAGTGGAGCATGCACGGACCCGCCTGTTCCCTTGAAAATGGCATGTCACAGGAGGGATTCCCGTTAA 486 0.4959 MGCLPYMLVSFPDVAAQTDSIGCAEPFNQISQYFNSKLKEAVLQLRKDLPSAAITYVDVYSVKYELLSHPEKYGFEHSLVACCGYGGKYNYNNEVVCGGTITVNGTDIFIGACDRPWVRANWDGIHYTEAANKFVFDRISSGACTDPPVPLKMACHRRDSR* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0300 161 Gene3D SGNH hydrolase 1 143 IPR036514 -
Vvi18g0300 161 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 1 143 - -
Vvi18g0300 161 Pfam GDSL-like Lipase/Acylhydrolase 4 139 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0300 Vvi-Chr18 2922016 2922590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0300 1 156 Acyl Lipid Metabolism Gene Families AT4G10950 27.215 2.97e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0300 - - vvi:109121704 343.969