Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0293 ATGACCATTGTGGCTACTGCTGCTGCCCTCTCTCTTCCATTATCTCTATGCCCAACTTCTAAGATCAACACCAAAAAGGGTGAAAGACGAGGGCTTCGGGTGTTTGCTGTATTTGGAGATGAAAGTGGGTCAGTGGAGAGGAAGAGCACATGGGGCACAATCTTTGATGTGGAGGATCCAAGGTCTAAATTCCCACAATCCAAAGGGAAGTTCTTGGATGTAAATCAAGCTCTTGAAGTAGCTAGATTTGATATTCAGTACTGTGATTGGCGGGCTCGGCAAGATCTGCTTACAATCATGCTCCTCCATGAAAAGGTTGTGGAAGTTCTAAATCCTTTGGCCCGTGAATACAAGTCCATTGGCACATTGAAGAAGGACCTTGCAGGGCTGCAAGAAGAGCTAGCACAAGCTCACAGACAGGTTCATATATCTGAAGCAAGGGTTGGCACTGCTTTAGATAAGTTGGCTTACATGGAAGAATTGGTTAATGATAGGCTATTACAAGACAGAAATACAGCAGATTCAAATCAAACTTCAACTTCAACTTCTCCTAGTACTTCCACAGCATCTCTTGATATGGTAAAGAGAAAGCTTCCCCAGAAAAGTTTGAATGTTTCAGGTCCTGTTCAGCCTTACCATCCTCGTCTGAAGAATTTCTGGTACCCTGTTGCTTTCTCCACAGACCTGAAGGATGATACCATGATTCCAATTGATTGCTTTGAGGAACCGTGGGTTGTCTTTCGTGGGCAAGATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGGGTGGGAGTACTCAACAGATGGGAAATGCGAGAAAATGCCGTCAACACGATTGCTTAATGTAAAAATAAAATCATTGCCGTGTTTAGAGCAAGAGGGAATGATCTGGATTTGGCCTGGCAGTGATCCTCCAACAGCCACCCTTCCTTCTTTACAACCTCCACCAGGATTTAAAATCCATGCTGAGATTGTCATGGAACTTCCAGTGGAACATGGGCTTCTTCTGGATAACCTTTTGGATCTTGCACATGCCCCTTTCACTCATACATCCACCTTTGCCAAAGGATGGAGCGTGCCTAGCTTGGTAAAATTCTTGACACCTGCATCTGGACTCCAAGGATACTGGGATCCCTACCCCATAGATATGGAATTTCGACCACCTTGTATGGTGCTGTCAACCATTGGTATCTCAAAACCCGGGAAATTGGAGGGACAGAGCACCAAGCAGTGTGCGACACATCTTCATCAGCTCCATGTCTGCTTACCTTCATCAAGAGACAAGACAAGGTTACTGTACAGAATGTCACTGGACTTTGCTCCTGTGCTTCAGCACATCCCTTTCATGCAATATCTCTGGAGATATTTTGCAGAAAAGGTGTTGAATGAGGATCTACGGCTTGTACTTGGACAACAAGACCGGATGCTGATGGGGGCAAATGTGTGGAACTGCCCAGTATCATATGACAAGCTTGGAGTGAGGTACAGGCTATGGAGAGACGCTGTGGAACGAGGAGCTAAGCGATTACCCTTCACTGAATCAACATAA 1614 0.4566 MTIVATAAALSLPLSLCPTSKINTKKGERRGLRVFAVFGDESGSVERKSTWGTIFDVEDPRSKFPQSKGKFLDVNQALEVARFDIQYCDWRARQDLLTIMLLHEKVVEVLNPLAREYKSIGTLKKDLAGLQEELAQAHRQVHISEARVGTALDKLAYMEELVNDRLLQDRNTADSNQTSTSTSPSTSTASLDMVKRKLPQKSLNVSGPVQPYHPRLKNFWYPVAFSTDLKDDTMIPIDCFEEPWVVFRGQDGKPGCVRNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTRLLNVKIKSLPCLEQEGMIWIWPGSDPPTATLPSLQPPPGFKIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTKQCATHLHQLHVCLPSSRDKTRLLYRMSLDFAPVLQHIPFMQYLWRYFAEKVLNEDLRLVLGQQDRMLMGANVWNCPVSYDKLGVRYRLWRDAVERGAKRLPFTEST* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0293 537 Gene3D - 338 530 - -
Vvi18g0293 537 Coils Coil 120 147 - -
Vvi18g0293 537 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 220 320 IPR017941 GO:0051537
Vvi18g0293 537 Gene3D - 214 336 IPR036922 GO:0051537
Vvi18g0293 537 Pfam Vanillate O-demethylase oxygenase C-terminal domain 353 377 IPR044043 GO:0016491
Vvi18g0293 537 MobiDBLite consensus disorder prediction 168 191 - -
Vvi18g0293 537 SUPERFAMILY ISP domain 216 324 IPR036922 GO:0051537
Vvi18g0293 537 CDD Rieske_RO_Alpha_Cao 203 331 - -
Vvi18g0293 537 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 261 283 IPR015881 GO:0005506|GO:0051537
Vvi18g0293 537 SUPERFAMILY Bet v1-like 316 526 - -
Vvi18g0293 537 Pfam Rieske [2Fe-2S] domain 220 301 IPR017941 GO:0051537
Vvi18g0293 537 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 105 522 - -
Vvi18g0293 537 Pfam Pheophorbide a oxygenase 407 501 IPR013626 GO:0010277
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0293 Vvi-Chr18 2882123 2885275 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0293 K13600 - vvi:100247245 1090.49