Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0285 ATGATGATGATTCATTTGCAGAAATTATTAATCATCTTCTTGATCTTGATTTTCGCAGTCTCTGTGAATTGTATAGATAGAATCACAGCTCCAACCGCTTCCTCCGACCATGACTACTCCTACTTTGAGCCCCCCTGTTGCAACTCCAAGGCTCCAACCACTCAGAAAAACGTGAGCTCCGCCCTCGACCGGTCCACAACTCCGGCCGTGGCGGACTGCACAATTTGGATTAAGGAACCGGCCGTGTCGGACTGCGCAATTTGGAGGAAGGAATGCTCGGAGGAGATTCTGAGGATCGCGAAGCGGCCGGAGACGGTGGAGTGGTTGAAAGGCATAAGGAGGAGAATCCACGAGAATCCGGAGCTGGCTTTCGAGGAATTCAATACCAGCCGATTGATTCGCCGTGAATTGGATCAGATGGACATCAGCTATCGTTTTCCGCTGGCGAAGACCGGGATTCGAGCCACCATCGGCACCGGAGGTCCGCCGTTTGTTGCCGTCAGGGCCGACATGGATGCTCTCCCAATTCAGGAGGCCGTGGAATGGGAGCACAAAAGCAAAGTTGCTGGGAAAATGCATGCTTGTGGGCACGATGCACACGTTGCAATGCTTCTTGGGGCTGCCAGGATACTCAAGGCCCGTGAACATCATTTAAAGGGAACCGTAGTACTAGTGTTTCAACCAGCAGAGGAAGCTGGGAATGGTGCAAAACGGATGATAGGAGATGGGGCTCTGGAGAATGTGGAGGCCATATTTGCAGTTCATGTATCTCATGAACACCCGACGTCTATCATTGGGTCGAGGCCTGGTCCATTGCTAGCTGGGTGTGGCTTCTTCAGAGCTGTAATCACTGGAAAAGAGGGTGACGCCGGGAATCCTCACCGATCAGTGGACCCTGTTTTGGCTGCCTCAGCTGCGGTTATAAGTTTACAGGGCATTGTGTCTCGGGAAGCAAATCCACTGGACTCCCAGGTTGTGTCGGTGACTTCATTGAATGGGGGCGATAGTCTTGACATGATAGCCGACACCGTGGTTCTGGGTGGTACCTTCAGGGCCTTCTCCAACACAAGTTTCTATCAACTTCTTCAAAGAATAGAGGAGGTAATTGTAGAACAGGCCAGAGTTTTCAGATGCTCAGCAACAGTGGACTTCTTTGAGAAAGAGTACACCATTTATCCCCCAACAGTGAACGATGAAGGAATGTATGAGCATGTGAGGAAGGTAGCCATTGATCTGTTTGGCCCTACAAATTTCAGGGTGGTGCCACCGATGATGGGTGCTGAGGACTTCTCCTTCTACTCCGAGGTGGTCCCTGCTGCCTTCTTCTACATAGGCGTAAGAAACGAGACCCTAGGGTCTATACACACAGGCCACTCCCCTTATTTCATGATTGACGAAGATGCTCTCCCTATGGGTGCTGCAGCTCATGCTGCCATTGCCGAGAGATATCTCAACGAGCACAGACGATGA 1470 0.5116 MMMIHLQKLLIIFLILIFAVSVNCIDRITAPTASSDHDYSYFEPPCCNSKAPTTQKNVSSALDRSTTPAVADCTIWIKEPAVSDCAIWRKECSEEILRIAKRPETVEWLKGIRRRIHENPELAFEEFNTSRLIRRELDQMDISYRFPLAKTGIRATIGTGGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAARILKAREHHLKGTVVLVFQPAEEAGNGAKRMIGDGALENVEAIFAVHVSHEHPTSIIGSRPGPLLAGCGFFRAVITGKEGDAGNPHRSVDPVLAASAAVISLQGIVSREANPLDSQVVSVTSLNGGDSLDMIADTVVLGGTFRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFEKEYTIYPPTVNDEGMYEHVRKVAIDLFGPTNFRVVPPMMGAEDFSFYSEVVPAAFFYIGVRNETLGSIHTGHSPYFMIDEDALPMGAAAHAAIAERYLNEHRR* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0285 489 Pfam Peptidase dimerisation domain 279 373 IPR011650 -
Vvi18g0285 489 Pfam Peptidase family M20/M25/M40 166 481 IPR002933 GO:0016787
Vvi18g0285 489 Gene3D Zn peptidases 111 469 - -
Vvi18g0285 489 NCBIfam amidohydrolase 111 472 IPR017439 GO:0016787
Vvi18g0285 489 SUPERFAMILY Zn-dependent exopeptidases 104 486 - -
Vvi18g0285 489 CDD M20_IAA_Hyd 109 484 IPR044757 GO:0009850|GO:0016787
Vvi18g0285 489 Gene3D - 274 392 - -
Vvi18g0285 489 SUPERFAMILY Bacterial exopeptidase dimerisation domain 275 384 IPR036264 -
Vvi18g0285 489 PANTHER PEPTIDASE M20 FAMILY MEMBER 90 488 IPR017439 GO:0016787
Vvi18g0285 489 FunFam N-acetyldiaminopimelate deacetylase 274 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0285 Vvi-Chr18 2822316 2827158 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0285 K21604 K14664 vvi:100264396 971.844