Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0282 ATGGCGACTAGGGTTTCGATCTGCTTGTTTGTATTGGCTTTTGCCTTCTCAATCTTAGCTTCGTCTCCGGTGAAGATCTCGGCTGCGGAGGATGAAGCTAAAGAGTTCGTCCTCACTTTGACGCACTCTAACTTCTCTGACATTGTCAGTAAGCACGACTTCATCGTCGTTGAGTTCTACGCTCCATGGTGCGGCCACTGTAAGAAAATTGCACCTGAGTATGAGAAGGCTGCTTCTATACTGAGTAGTCATGACCCTCCAATTATTCTTGCCAAAGTTGATGCCAATGATGATGCAAACAAAGAGCTTGCATCAGAATTTGAGATTAGGGGCTTCCCAACTCTTAAGATTTTGAGAAATGGAGGGAAATCTATTGAAGAGTACAAAGGTCCTCGTGAGGCCGATGGTATTGTTGAGTATCTGAAGAAACAAAGTGGTCCTGCTTCTGCTGAGATAAAATCTGCTGAAGATGCTAGCAGTCTTATCGTTGACAATAAAATTGTCATTGTTGGAGTGTTCCCAAAGTTTTCTGGAGAGGAATTTGAGAACTTCACGGCTGTAGCTGAGAAATTTCGCTCTGACTATGATTTTGTTCATACTTCGGATGCCAAATTCCTTCCTCGTGGGGAATCATCAGTGACTGGCCCCTTGGTTAGGCTGTTGAAGCCATTTGATGAACTCTTTGTTGATTTCCAGGATTTTCATGTTGATGCTCTGGAGAAGTTTGTTGAGGAATCCAGTGTGCCTATTGTCACACTCTTTAACAAGGATCCTAGCAACCACCCTTTTGTTATCAAATTCTTCAATGGTCCCAATGCCAAGGCCATGCTGTTTCTAGACCACAGCAGTGAGCTTTTTGACGCTTTTAAGTCAAAGTATCATGAAGTTGCTGAACAATACAAAGGAAAAGGCATAAACTTCCTCCTGGGAGATCTTGAAGCTAGTCAAGGTGCTTTCCAGTATTTTGGACTTAAGGACGACCAGGTGCCTCTCATCGTTATACAAACCAATGATGGACAGAAATATCTGAAACCTAATTTGGAGCCTGACCATATTGCACCTTGGGTGAAGGAATACCAGGATGGCAAAGTGCTACCATACAAAAAATCCGAACCTATCCCTGAAGTCAACAATGAACCTGTGAAGGTGGTCGTAGCTGATACCCTCCAGGAAATAGTTTTTAACTCTGGAAAAAATGTTCTGGTGGAGTTTTATGCTCCTTGGTGTGGGCATTGCAAAAAATTGGCTCCAATCTTGGATGAAGTTGCTATCTCCTTTGAAAATGATGCTGATGTGGTCATTGCAAAGCTGGATGCAACTGCAAATGATATCCCAAATGACACTTTCGATGTGAAAGGATACCCAACTCTGTACTTTAAGTCTGCTAGCGGAAACATCTCGCAGTATGAAGGGGATAGGTCGAAGGAAGACATCATTGAGTTCATTAAGAAGAATCGGGATAAGGCTGCTCAGCAAGAAGGCTCAAAAGATGAGCTGTGA 1500 0.4307 MATRVSICLFVLAFAFSILASSPVKISAAEDEAKEFVLTLTHSNFSDIVSKHDFIVVEFYAPWCGHCKKIAPEYEKAASILSSHDPPIILAKVDANDDANKELASEFEIRGFPTLKILRNGGKSIEEYKGPREADGIVEYLKKQSGPASAEIKSAEDASSLIVDNKIVIVGVFPKFSGEEFENFTAVAEKFRSDYDFVHTSDAKFLPRGESSVTGPLVRLLKPFDELFVDFQDFHVDALEKFVEESSVPIVTLFNKDPSNHPFVIKFFNGPNAKAMLFLDHSSELFDAFKSKYHEVAEQYKGKGINFLLGDLEASQGAFQYFGLKDDQVPLIVIQTNDGQKYLKPNLEPDHIAPWVKEYQDGKVLPYKKSEPIPEVNNEPVKVVVADTLQEIVFNSGKNVLVEFYAPWCGHCKKLAPILDEVAISFENDADVVIAKLDATANDIPNDTFDVKGYPTLYFKSASGNISQYEGDRSKEDIIEFIKKNRDKAAQQEGSKDEL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0282 499 SUPERFAMILY Thioredoxin-like 247 378 IPR036249 -
Vvi18g0282 499 ProSitePatterns Thioredoxin family active site. 401 419 IPR017937 -
Vvi18g0282 499 SUPERFAMILY Thioredoxin-like 150 249 IPR036249 -
Vvi18g0282 499 FunFam Protein disulfide-isomerase 376 489 - -
Vvi18g0282 499 ProSiteProfiles Thioredoxin domain profile. 27 146 IPR013766 -
Vvi18g0282 499 CDD PDI_b'_family 264 359 - -
Vvi18g0282 499 PANTHER PROTEIN DISULFIDE ISOMERASE 10 499 - -
Vvi18g0282 499 FunFam Protein disulfide-isomerase 145 245 - -
Vvi18g0282 499 Gene3D Glutaredoxin 250 374 - -
Vvi18g0282 499 ProSitePatterns Thioredoxin family active site. 56 74 IPR017937 -
Vvi18g0282 499 ProSiteProfiles Thioredoxin domain profile. 359 487 IPR013766 -
Vvi18g0282 499 CDD PDI_a_family 38 141 - -
Vvi18g0282 499 Pfam Thioredoxin 37 143 IPR013766 -
Vvi18g0282 499 Pfam Thioredoxin 381 484 IPR013766 -
Vvi18g0282 499 Gene3D Glutaredoxin 25 144 - -
Vvi18g0282 499 Pfam Thioredoxin-like domain 173 357 - -
Vvi18g0282 499 NCBIfam protein disulfide-isomerase 37 493 IPR005792 GO:0003756
Vvi18g0282 499 FunFam Protein disulfide-isomerase 246 375 - -
Vvi18g0282 499 Gene3D Glutaredoxin 375 490 - -
Vvi18g0282 499 SUPERFAMILY Thioredoxin-like 346 487 IPR036249 -
Vvi18g0282 499 PRINTS Thioredoxin family signature 63 72 - -
Vvi18g0282 499 PRINTS Thioredoxin family signature 108 119 - -
Vvi18g0282 499 PRINTS Thioredoxin family signature 55 63 - -
Vvi18g0282 499 Gene3D Glutaredoxin 145 249 - -
Vvi18g0282 499 FunFam Protein disulfide-isomerase 25 144 - -
Vvi18g0282 499 CDD PDI_a_PDI_a'_C 380 482 - -
Vvi18g0282 499 SUPERFAMILY Thioredoxin-like 37 147 IPR036249 -
Vvi18g0282 499 CDD PDI_b_family 149 245 - -
Vvi18g0282 499 NCBIfam protein disulfide-isomerase domain 40 144 IPR005788 GO:0003756
Vvi18g0282 499 NCBIfam protein disulfide-isomerase domain 385 485 IPR005788 GO:0003756
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0282 Vvi-Chr18 2791946 2797838 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0282 K09580 - vvi:100259138 986.482