Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0278 ATGATCCAAAGTGATTCAATGGGACCCTCGAGGTTGATCAAGAGGAGGAGCGCAGGATCATTATTCATCGAGGCGATGCGGTTTGTGGTATTGTCTGAAATGTTTCTGGGCTGTTTCTCAGCTTCCAATCAGCCTATTTCCAATAGGATGGGGCACACCGTGGTTTTTCCTCTTCAAGGGAATGTTTACCCTCAAGGGTTTTATTCTGTGAGTCTGCGCATAGGCAATCCACCTAAACCTTATACACTTGATATTGACTCCGGCAGCGACCTCACTTGGCTACAGTGTGATGCACCTTGTGTCAGTTGCACTAAGGCACCTCACCCTCCCTACAAGCCCAACAAGGGTCCTATAACCTGTAACGACCCAATGTGTTCTGCCCTTCACTGGCCTTCAAAGCCACCATGCAAGGCTTCTCACGAACAATGTGACTATGAGGTTAGCTATGCGGATCATGGTTCATCTCTTGGGGTTCTGGTCCATGACATCTTCAGCTTACAACTCACCAATGGTACTCTTGCTGCCCCCCGCCTGGCTTTTGGATGCGGATATGATCAAAGCTATCCCGGACCAAATGCTCCTCCTTTTGTGGATGGAGTGCTGGGTCTTGGCTATGGCAAATCCAGCATTGTTACACAGCTACGCAGCCTGGGTCTGATTCGGAGCATAGTGGGCCACTGTTTAAGTGGTCGAGGAGGAGGGTTCCTGTTCCTTGGAGATGGTCTTTCCACTACTCCAGGAATCATCTGGACACCAATGTCGAGAAAATCTGGAGAGAGTGCCTATGCGTTGGGTCCAGCTGATCTTCTTTTCAATGGGCAGAATAGTGGAGTGAAGGGCCTTCGCCTGGTGTTTGACAGCGGTAGCTCCTACACCTACTTCAATGCTCAAGCTTACAAAACTACACTTTCACTGGTGAGAAAATATTTGAATGGCAAGTTAAAGGAAACAGCTGATGAGTCCCTTCCAGTCTGCTGGAGAGGTGCAAAACCTTTCAAATCTATTTTTGAAGTGAAGAACTATTTCAAGCCCTTTGCACTCAGCTTTACAAAAGCCAAGAGTGCTCAACTACAATTGCCACCAGAATCTTATCTCATTATCTCAAAACATGGCAACGCATGCTTGGGGATTTTGAATGGTTCTGAAGTAGGACTTGGAGACAGCAACGTCATAGGAGACATAGCTTTTCAAGATAAAATGGTGATCTATGACAATGAGCGCCAGCAGATCGGTTGGGTTCCTAAAGACTGCAATAAGCTTCCCAAAGTTGATCGTGATTATAATATCGGGTTTTCACCAGCTGACCTGGGTATGGTGGTGAAGCAATTTTCTGCAGCTTATGCGTCACGAGAAGACCTATAA 1362 0.4692 MIQSDSMGPSRLIKRRSAGSLFIEAMRFVVLSEMFLGCFSASNQPISNRMGHTVVFPLQGNVYPQGFYSVSLRIGNPPKPYTLDIDSGSDLTWLQCDAPCVSCTKAPHPPYKPNKGPITCNDPMCSALHWPSKPPCKASHEQCDYEVSYADHGSSLGVLVHDIFSLQLTNGTLAAPRLAFGCGYDQSYPGPNAPPFVDGVLGLGYGKSSIVTQLRSLGLIRSIVGHCLSGRGGGFLFLGDGLSTTPGIIWTPMSRKSGESAYALGPADLLFNGQNSGVKGLRLVFDSGSSYTYFNAQAYKTTLSLVRKYLNGKLKETADESLPVCWRGAKPFKSIFEVKNYFKPFALSFTKAKSAQLQLPPESYLIISKHGNACLGILNGSEVGLGDSNVIGDIAFQDKMVIYDNERQQIGWVPKDCNKLPKVDRDYNIGFSPADLGMVVKQFSAAYASREDL* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0278 453 SUPERFAMILY Acid proteases 60 420 IPR021109 -
Vvi18g0278 453 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 83 94 IPR001969 GO:0004190|GO:0006508
Vvi18g0278 453 CDD nucellin_like 66 417 IPR033823 GO:0004190
Vvi18g0278 453 FunFam Aspartyl protease family protein 44 240 - -
Vvi18g0278 453 Pfam Xylanase inhibitor C-terminal 283 412 IPR032799 -
Vvi18g0278 453 ProSiteProfiles Peptidase family A1 domain profile. 68 413 IPR033121 -
Vvi18g0278 453 Pfam Xylanase inhibitor N-terminal 68 240 IPR032861 -
Vvi18g0278 453 PANTHER ASPARTYL PROTEASES 60 411 IPR001461 GO:0004190|GO:0006508
Vvi18g0278 453 FunFam Aspartic proteinase Asp1 isoform A 244 421 - -
Vvi18g0278 453 Gene3D Acid Proteases 241 423 IPR021109 -
Vvi18g0278 453 Gene3D Acid Proteases 42 240 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0278 Vvi-Chr18 2734694 2737407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0278 53 423 Miscellaneous Gene Families AT1G44130 59.358 2.99e-164 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0278 - - vvi:100243763 922.539