Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0270 ATGCCGAGAAAGGAAGCGCTTGAGATGCGGTCGAGGCTGCTGTTGTGGTTTGCTGTGCTCTCAGCGGCAGTCGCCGTCGTGTGCGGAGGAAGCGTGACTTACGACGGCAGATCACTGATCATCAATGGCCAACGGAGGCTTCTTTTCTCGGGTTCAATTCACTATCCTAGAAGCACTCCTGAGATGTGGCCATCTTTGATTTCCAAAGCCAAAGAAGGAGGGATAGATGTGATAGAAACCTACGCATTTTGGAACCAACATGAGCCCAAACAAGGACAGTATGATTTTAGTGGAAGACTTGATATAGTAAAATTCTTTAAGGAAGTCCAAGCACAAGGTCTATATGCATGTCTTCGAATTGGACCCTTCATTGAGAGTGAATGGAATTATGGAGGTCTTCCATTTTGGTTGCATGATGTCCCGGGCATTATTTATCGATCTGATAATGAACCCTTCAAGTTTTACATGCAAAACTTTACAACGAAAATAGTAAACTTGATGAAATCAGAGAATCTTTATGCTTCACAAGGTGGCCCAATCATTTTGTCACAGATTGAGAACGAGTACAAAAACGTAGAAGCAGCTTTTCATGAGAAAGGGCCGCCTTATGTGAGGTGGGCAGCTAAAATGGCGGTGGATCTTCAAACTGGTGTTCCCTGGGTGATGTGCAAACAAGATGATGCTCCTGACCCTGTGATTAATGCGTGCAATGGTATGAAATGCGGCGAAACATTTGCTGGACCAAACAAACCAAATAAGCCAGCGATATGGACAGAGAACTGGACATCTGTCTATGAGGTATATGGTGAAGACAAACGTGGAAGAGCTGCAGAAGACCTTGCATTTCAAGTAGCACTATTCATAGCAAAGAAGAATGGAAGCTTTATAAATTACTATATGTACCATGGAGGAACCAACTTTGGAAGAACGAGCTCTTCATATGTACTGACAGCTTATTATGATCAAGCTCCTCTTGATGAGTATGGTTTGATCAGGCAACCGAAATGGGGCCATCTCAAGGAATTACATGCAGTAATAAAACTATGTTCTGATACTTTACTTCATGGAGTTCAATACAACTACTCTTTGGGTCAACTGCAAGAAGCCTATCTCTTTAAAAGACCATCCGGCCAATGTGCTGCCTTTCTTGTGAATAATGACAAGCGAAGAAATGTCACAGTGCTGTTTCAAAATACTAATTATGAACTGGCTGCAAATTCAATCAGCATCCTACCGGACTGCAAGAAAATAGCCTTCAACACTGCAAAGGTAAGTACACAGTTTAATACAAGATCAGTCCAAACAAGGGCAACTTTTGGTTCAACTAAACAATGGAGCGAATACAGAGAAGGTATCCCCAGCTTTGGTGGTACTCCATTGAAAGCAAGCATGTTATTAGAGCACATGGGTACAACAAAGGATGCATCTGATTATCTTTGGTACACTTTAAGGTTTATACAGAATTCCTCTAATGCTCAACCGGTACTTCGTGTGGACTCTCTTGCGCATGTTCTGCATGCATTTGTTAATGGAAAATATATTGCATCTGCACATGGAAGTCATCAGAATGGAAGTTTCTCTCTGGTGAATAAAGTTCCTCTTAATTCTGGGCTCAACAGAATCTCTTTACTTAGTGTAATGGTTGGTTTACCGGATGCAGGACCATATCTTGAACACAAGGTTGCTGGAATACGTAGGGTGGAGATTCAAGACGGAGGTGACTCAAAAGACTTCAGCAAGCATCCATGGGGATATCAGGTTGGATTGATGGGAGAAAAGTCGCAAATTTACACTTCTCCTGGATCACAAAAAGTTCAATGGCATGGGTTAGGAAGCCATGGGCGTGGACCACTCACATGGTATAAGACATTATTTGATGCACCTCCTGGGAATGATCCAGTTGTACTGTTCTTCGGTTCCATGGGAAAAGGTGAGGCTTGGGTAAATGGACAAAGCATTGGTAGGTACTGGGTCTCCTACCTTACCCCAAGTGGAGAGCCTTCTCAAACCTGGTACAATGTACCTCGAGCCTTCCTCAACCCTAAAGGGAATTTATTAGTTGTACAAGAAGAAGAATCTGGGGACCCTCTTAAGATTTCCATAGGCACTGTTTCGGTAACAAATGTATGCGGGCATGTAACGGATTCTCACCCTCCCCCAATAATTTCATGGACGACCAGTGATGATGGGAATGAAAGCCACCATGGGAAGATACCTAAAGTTCAGCTTCGTTGTCCTCCAAGTAGCAACATCTCCAAGATTACATTTGCAAGCTTCGGAACCCCTGTAGGTGGCTGTGAAAGTTATGCCATTGGAAGCTGTCACTCTCCTAACTCTTTAGCCGTTGCGGAGAAGGCTTGTCTAGGGAAGAACATGTGTTCCATTCCTCATTCGCTTAAAAGTTTTGGGGATGACCCATGTCCAGGAACTCCTAAAGCCCTTTTGGTAGCTGCACAGTGTAAATGA 2466 0.4339 MPRKEALEMRSRLLLWFAVLSAAVAVVCGGSVTYDGRSLIINGQRRLLFSGSIHYPRSTPEMWPSLISKAKEGGIDVIETYAFWNQHEPKQGQYDFSGRLDIVKFFKEVQAQGLYACLRIGPFIESEWNYGGLPFWLHDVPGIIYRSDNEPFKFYMQNFTTKIVNLMKSENLYASQGGPIILSQIENEYKNVEAAFHEKGPPYVRWAAKMAVDLQTGVPWVMCKQDDAPDPVINACNGMKCGETFAGPNKPNKPAIWTENWTSVYEVYGEDKRGRAAEDLAFQVALFIAKKNGSFINYYMYHGGTNFGRTSSSYVLTAYYDQAPLDEYGLIRQPKWGHLKELHAVIKLCSDTLLHGVQYNYSLGQLQEAYLFKRPSGQCAAFLVNNDKRRNVTVLFQNTNYELAANSISILPDCKKIAFNTAKVSTQFNTRSVQTRATFGSTKQWSEYREGIPSFGGTPLKASMLLEHMGTTKDASDYLWYTLRFIQNSSNAQPVLRVDSLAHVLHAFVNGKYIASAHGSHQNGSFSLVNKVPLNSGLNRISLLSVMVGLPDAGPYLEHKVAGIRRVEIQDGGDSKDFSKHPWGYQVGLMGEKSQIYTSPGSQKVQWHGLGSHGRGPLTWYKTLFDAPPGNDPVVLFFGSMGKGEAWVNGQSIGRYWVSYLTPSGEPSQTWYNVPRAFLNPKGNLLVVQEEESGDPLKISIGTVSVTNVCGHVTDSHPPPIISWTTSDDGNESHHGKIPKVQLRCPPSSNISKITFASFGTPVGGCESYAIGSCHSPNSLAVAEKACLGKNMCSIPHSLKSFGDDPCPGTPKALLVAAQCK* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0270 821 CDD Gal_Rha_Lectin_BGal 729 820 - -
Vvi18g0270 821 FunFam Beta-galactosidase 732 821 - -
Vvi18g0270 821 PRINTS Glycosyl hydrolase family 35 signature 256 271 IPR001944 GO:0004553|GO:0005975
Vvi18g0270 821 PRINTS Glycosyl hydrolase family 35 signature 313 329 IPR001944 GO:0004553|GO:0005975
Vvi18g0270 821 PRINTS Glycosyl hydrolase family 35 signature 616 630 IPR001944 GO:0004553|GO:0005975
Vvi18g0270 821 PRINTS Glycosyl hydrolase family 35 signature 294 309 IPR001944 GO:0004553|GO:0005975
Vvi18g0270 821 PRINTS Glycosyl hydrolase family 35 signature 175 190 IPR001944 GO:0004553|GO:0005975
Vvi18g0270 821 PRINTS Glycosyl hydrolase family 35 signature 643 659 IPR001944 GO:0004553|GO:0005975
Vvi18g0270 821 PRINTS Glycosyl hydrolase family 35 signature 118 137 IPR001944 GO:0004553|GO:0005975
Vvi18g0270 821 PRINTS Glycosyl hydrolase family 35 signature 42 59 IPR001944 GO:0004553|GO:0005975
Vvi18g0270 821 PRINTS Glycosyl hydrolase family 35 signature 63 81 IPR001944 GO:0004553|GO:0005975
Vvi18g0270 821 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 177 189 IPR019801 GO:0004553|GO:0005975
Vvi18g0270 821 SUPERFAMILY (Trans)glycosidases 31 349 IPR017853 -
Vvi18g0270 821 Pfam Galactose binding lectin domain 743 820 IPR000922 GO:0030246
Vvi18g0270 821 Pfam Beta-sandwich domain in beta galactosidase 353 424 IPR041392 -
Vvi18g0270 821 PANTHER BETA-GALACTOSIDASE RELATED 23 730 IPR001944 GO:0004553|GO:0005975
Vvi18g0270 821 FunFam Beta-galactosidase 299 426 - -
Vvi18g0270 821 SUPERFAMILY Galactose-binding domain-like 582 728 IPR008979 -
Vvi18g0270 821 Gene3D - 731 821 IPR043159 -
Vvi18g0270 821 Pfam Glycosyl hydrolases family 35 38 344 IPR031330 -
Vvi18g0270 821 Gene3D Glycosidases 30 349 - -
Vvi18g0270 821 FunFam Beta-galactosidase 585 710 - -
Vvi18g0270 821 Gene3D - 591 710 - -
Vvi18g0270 821 SUPERFAMILY Galactose-binding domain-like 408 566 IPR008979 -
Vvi18g0270 821 FunFam Beta-galactosidase 28 350 - -
Vvi18g0270 821 ProSiteProfiles SUEL-type lectin domain profile. 739 821 IPR000922 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0270 Vvi-Chr18 2604468 2613076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0270 32 707 Glycoside Hydrolase AT5G63800 62.739 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0270 - - vri:117906331 1670.98