Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0269 ATGCTAAGAGATATGGGTTGTTGGTGGTGGTGGTGGTTTGCGGTGCTGTCGTCGGCTGTGGCCTCCGTGTGCGGCGGAGAGGTGACCTACGACGGCAGGTCTCTGATCATCAATGGCCAACGCAAGATTCTTTTCTCTGGTTCTATTCACTATCCTAGAAGCACCCCTGAGATGTGGCCATCTTTGATCTCGCAAGCCAAACAAGGAGGAATTGACGTGATAGAAACATATGTGTTCTGGAACCAGCATGAGCCCAAACCAGGACAGTATGATTTCAGTGGAAGACGTGATATAGTGAGATTCATCAGGGAAGTTCAAGCACAAGGCCTCTATGCATGCCTTCGAATTGGACCCTTCATCCAGGCTGAATGGAATTATGGAGGTTTTCCATTTTGGTTGCATGATGTTCCGGGCATTGTTTATCGAACTGATAACGAACCATTCAAGTTTTATATGCGAAACTTTACAACAAAGATTGTGGAAATAATGAAATCAGAGAACTTGTATGCTTCACAAGGCGGTCCTATCATATTACAACAGATCGAGAACGAGTACAAAACAGTGGAAGCAAACTTTGGAGAGGCCGGGAAGAGGTATGTTCTTTGGGCAGCCAATATGGCTGTGGGGCTTGAGACTGGTGTGCCATGGGTGATGTGCAAGCAAGATGATGCTCCTGACCCTGTGATCAATTCATGCAATGGTAGACTATGCGGAGAAACATTTGCAGGACCCAACTCACCAAATAAGCCAGCAATCTGGACAGAAAACTGGACATCTAGCTATCCATTATTTGGCGAAGATGCACGCCCAAGACCTGTGGAAGACATTGCATTTCATGTTGCACTATTTGTTGCTAAGATGAATGGGAGCTTCATAAATTATTACATGTATCATGGAGGAACCAATTTTGGAAGAACAGCCTCTGCATACGTACAGACAGCTTATTACGATGAAGCTCCTCTTGATGAGTACGGTTTGATTCAGCAACCAACATGGGGTCATCTAAAGGAATTGCATGCTGCAGTAAAACTATGCTCAGAGACTTTACTTCAGGGAGCCCAGTCCAATTTGTCCTTGGGTACCAAACTACAAGAAGCCTATGTTTTTAGGGGACAATCAGGCAAATGTGCTGCCTTTCTTGTGAACAATGACAGTAGAACAGATGTCACAGTGGTCTTTCAAAATACTTCTTATGAACTGCCTAGAAAATCAATCAGCATCCTGCCAGACTGCAAGAATGAAGCATTCAACACTGCAAAGATAAGCACACAACAAAATACAAGATCAATCCAAACAGTCACAAAGTTTAATTCAACTGAACAATGGGAAGAATATAAAGAAAGTATCCTCAACTTTGATGATACTTCATCAAGAGCAAACACGTTACTAGAGCACATGAATACAACGAAGGACGCATCTGATTACCTTTGGTATACTTTCAGGTATAACAATGATCCCTCTAATGGACAATCCGTGCTTAGTACAAATTCCCGTGCACATGCTTTGCATGCATTTATCAATGGAAGGCATACTGGATCTCAACATGGAAGCAGTAGCAATTTGAGTTTCTCTCTGGATAATACTGTTTCTTTTAGGGCTGGGATAAACAATGTCTCATTACTTAGCGTAATGGTTGGCTTACCGGATTCAGGAGCATATCTTGAGCGTAGGGTTGCTGGATTACGTAGGGTGCGGATTCAAAGCAACGGTAGCTTAAAAGATTTCACCAACAACCCTTGGGGGTATCAGGTTGGACTGTTGGGAGAGAAATTACAGATTTACACAGATGTAGGATCACAAAAGGTTCAATGGAGTAAGTTTGGAAGCTCCACAAGTGGACTGCTCACGTGGTATAAGACTGTATTTGATGCACCTGCCGGGAATGAACCAGTTGCATTGAACCTTGTTTCCATGAGAAAAGGTGAAGTTTGGGTTAATGGACAAAGCATTGGTCGTTATTGGGTCTCCTTCCTTACCCCCAGTGGAAAGCCTTCACAAATATGGTACCATATACCTCGATCCTTCCTCAAACCTACAGGGAACCTATTAGTTCTACTAGAAGAAGAAACAGGGCACCCTGTTGGGATTTCAATAGGCAAAGTTTCAATCCCAAAAATATGCGGGCATGTTTCAGAATCTCATCTGCCCCCAGTAATTTCAAGGGTGATATATAAGAAGCATGAAAACCACCATGGCAGGAGACCTAAAGTTCAGCTTCGTTGTCCTTCAAATAGAAACATCTCCAGAATTTTATTTGCAAGCTTTGGAACCCCTTCAGGTGATTGTCAAAGTTATGCTGTTGGAAGCTGTCACTCATCCAACTCTCGATCCAATGTGGAGAAGGCCTGTCTAGGGAAAGGGATGTGTTCAGTTCCTCTCTCATACAAAAGATTTGGTGGTGACCCATGTCCTGGAACTCCAAAAGCTCTCTTAGTTGATGTACAATGCACATGA 2454 0.4332 MLRDMGCWWWWWFAVLSSAVASVCGGEVTYDGRSLIINGQRKILFSGSIHYPRSTPEMWPSLISQAKQGGIDVIETYVFWNQHEPKPGQYDFSGRRDIVRFIREVQAQGLYACLRIGPFIQAEWNYGGFPFWLHDVPGIVYRTDNEPFKFYMRNFTTKIVEIMKSENLYASQGGPIILQQIENEYKTVEANFGEAGKRYVLWAANMAVGLETGVPWVMCKQDDAPDPVINSCNGRLCGETFAGPNSPNKPAIWTENWTSSYPLFGEDARPRPVEDIAFHVALFVAKMNGSFINYYMYHGGTNFGRTASAYVQTAYYDEAPLDEYGLIQQPTWGHLKELHAAVKLCSETLLQGAQSNLSLGTKLQEAYVFRGQSGKCAAFLVNNDSRTDVTVVFQNTSYELPRKSISILPDCKNEAFNTAKISTQQNTRSIQTVTKFNSTEQWEEYKESILNFDDTSSRANTLLEHMNTTKDASDYLWYTFRYNNDPSNGQSVLSTNSRAHALHAFINGRHTGSQHGSSSNLSFSLDNTVSFRAGINNVSLLSVMVGLPDSGAYLERRVAGLRRVRIQSNGSLKDFTNNPWGYQVGLLGEKLQIYTDVGSQKVQWSKFGSSTSGLLTWYKTVFDAPAGNEPVALNLVSMRKGEVWVNGQSIGRYWVSFLTPSGKPSQIWYHIPRSFLKPTGNLLVLLEEETGHPVGISIGKVSIPKICGHVSESHLPPVISRVIYKKHENHHGRRPKVQLRCPSNRNISRILFASFGTPSGDCQSYAVGSCHSSNSRSNVEKACLGKGMCSVPLSYKRFGGDPCPGTPKALLVDVQCT* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0269 817 FunFam Beta-galactosidase 582 707 - -
Vvi18g0269 817 SUPERFAMILY (Trans)glycosidases 25 345 IPR017853 -
Vvi18g0269 817 Coils Coil 178 198 - -
Vvi18g0269 817 PRINTS Glycosyl hydrolase family 35 signature 613 627 IPR001944 GO:0004553|GO:0005975
Vvi18g0269 817 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Vvi18g0269 817 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Vvi18g0269 817 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Vvi18g0269 817 PRINTS Glycosyl hydrolase family 35 signature 252 267 IPR001944 GO:0004553|GO:0005975
Vvi18g0269 817 PRINTS Glycosyl hydrolase family 35 signature 309 325 IPR001944 GO:0004553|GO:0005975
Vvi18g0269 817 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Vvi18g0269 817 PRINTS Glycosyl hydrolase family 35 signature 640 656 IPR001944 GO:0004553|GO:0005975
Vvi18g0269 817 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Vvi18g0269 817 Pfam Galactose binding lectin domain 739 816 IPR000922 GO:0030246
Vvi18g0269 817 SUPERFAMILY Galactose-binding domain-like 405 562 IPR008979 -
Vvi18g0269 817 FunFam Beta-galactosidase 726 817 - -
Vvi18g0269 817 CDD Gal_Rha_Lectin_BGal 727 816 - -
Vvi18g0269 817 Gene3D Glycosidases 23 345 - -
Vvi18g0269 817 Pfam Glycosyl hydrolases family 35 34 341 IPR031330 -
Vvi18g0269 817 Gene3D - 580 708 - -
Vvi18g0269 817 Gene3D - 720 817 IPR043159 -
Vvi18g0269 817 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Vvi18g0269 817 PANTHER BETA-GALACTOSIDASE RELATED 19 732 IPR001944 GO:0004553|GO:0005975
Vvi18g0269 817 FunFam Beta-galactosidase 295 423 - -
Vvi18g0269 817 ProSiteProfiles SUEL-type lectin domain profile. 734 817 IPR000922 GO:0030246
Vvi18g0269 817 Pfam Beta-sandwich domain in beta galactosidase 349 421 IPR041392 -
Vvi18g0269 817 SUPERFAMILY Galactose-binding domain-like 578 719 IPR008979 -
Vvi18g0269 817 FunFam Beta-galactosidase 24 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0269 Vvi-Chr18 2592482 2602002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0269 28 703 Glycoside Hydrolase AT5G63800 61.561 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0269 - - vvi:100262510 1699.1