Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0268 ATGCACTCACTGAAACTGCCGCCAACAATGAAGAGAAGAAGACCCATTCCACAACCGCCTTCAACCCCTCCAACCCCAACCCTCCTCAAAACCCTAGTTTCCAACAGCAAACCCACTTCAAACTCCTCCAAGAAACCCATGATCCTCATCAAGACCCCACAAACGCCACCACCCACAACCCCAATATCACCCAAATGGGTGCCTCTCAATATTGCCAAATCGGAGCTCTCCCTTGCTCTTACCTTCCCAACTGGCCAAACCTTCAGGTGGAAGCAAACCACCCCTCTTCAGTACACTGGCGTCATTGGATCCCACCTCATCTCCCTCAAACACCTTCAAAACGGCGACGTTGCCTACCTCATTCATCAGAGCCCGTCGGAGGAGAATGCCAGGTCGGCTTTGTTGGATTTTCTCAATGTGGGTATTTCTCTGAGCGAAATGTGGGAGGTGTTCAAGGCTTCGGATTCGAGGTTTGCGGAATTGGCACAATATTTGGGTGGTGCAAGGGTGCTTAGGCAGGACCCACTTGAATGTTTGATTCAGTTTTTGTGTTCATCGAATAACAATATTGGGAGGATTACCAAAATGGTGGATTTTGTTTCGTCGTTGGGAAATTATCTGGGGAGTGTTGGGGGTTTTGATTTTTACGAGTTCCCATCTCTGGATCGGCTATCCATGGTTTCAGAGGAAGATTTTAGAGAGGCTGGCTTCGGTTACAGGGCCAAATACATAATTGGCACTGTCAAAGCTTTGCAGTCAAAGTCTGGTGGAGGCATAGAGTGGCTTGCTTCCCTTCGTGAAATGGACCTTCAAGAGGTGGTTGATGCCCTTTCCACTCTACCTGGTGTTGGTCCCAAGGTGGCAGCATGCATTGCTCTCTTTTCACTGGATCAGCATCATGCCATTCCTGTTGATACGCATGTGTGGCAGATTGCTACCAGATATCTCATCCCTGAGCTTGCAGGTGCCCGTCTGACACCTAAGCTTTGCAGTCGTGTGGCAGATGCATTTGTGAGCAAATATGGGAAATATGCTGGTTGGGCACAAACTCTACTCTTCATTGCTGAATTACCTTCACAAAAGACAATTCTACCACCAAAATTTTGGGCTATTGAGGAGAATAAAGACACTAACATAAAAGCTAGTACAACAGGATGA 1158 0.4767 MHSLKLPPTMKRRRPIPQPPSTPPTPTLLKTLVSNSKPTSNSSKKPMILIKTPQTPPPTTPISPKWVPLNIAKSELSLALTFPTGQTFRWKQTTPLQYTGVIGSHLISLKHLQNGDVAYLIHQSPSEENARSALLDFLNVGISLSEMWEVFKASDSRFAELAQYLGGARVLRQDPLECLIQFLCSSNNNIGRITKMVDFVSSLGNYLGSVGGFDFYEFPSLDRLSMVSEEDFREAGFGYRAKYIIGTVKALQSKSGGGIEWLASLREMDLQEVVDALSTLPGVGPKVAACIALFSLDQHHAIPVDTHVWQIATRYLIPELAGARLTPKLCSRVADAFVSKYGKYAGWAQTLLFIAELPSQKTILPPKFWAIEENKDTNIKASTTG* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0268 385 FunFam N-glycosylase/DNA lyase OGG1 295 357 - -
Vvi18g0268 385 SUPERFAMILY DNA-glycosylase 174 355 IPR011257 GO:0003824|GO:0006281
Vvi18g0268 385 Pfam HhH-GPD superfamily base excision DNA repair protein 180 316 IPR003265 GO:0006284
Vvi18g0268 385 PANTHER 8-OXOGUANINE DNA GLYCOSYLASE 53 375 - -
Vvi18g0268 385 SMART endo3end 184 357 IPR003265 GO:0006284
Vvi18g0268 385 MobiDBLite consensus disorder prediction 27 49 - -
Vvi18g0268 385 Gene3D - 147 357 IPR023170 -
Vvi18g0268 385 MobiDBLite consensus disorder prediction 1 63 - -
Vvi18g0268 385 FunFam N-glycosylase/DNA lyase 174 298 - -
Vvi18g0268 385 SUPERFAMILY TATA-box binding protein-like 61 173 - -
Vvi18g0268 385 Pfam 8-oxoguanine DNA glycosylase, N-terminal domain 69 179 IPR012904 GO:0003684|GO:0006289|GO:0008534
Vvi18g0268 385 Gene3D Hypothetical protein; domain 2 174 298 - -
Vvi18g0268 385 CDD ENDO3c 177 354 IPR003265 GO:0006284
Vvi18g0268 385 Gene3D - 59 138 - -
Vvi18g0268 385 MobiDBLite consensus disorder prediction 12 26 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0268 K03660 - vvi:100264280 718.383