Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0267 ATGTTTTTGGAGAATATATCGCATGGGCAGCTCCAGGCGTTGTCCGCCGTGCCGGCGGATAGTCCGTCTTTGGCGACGTCGGATCAGGAGAGATCGGATGGAGGTGGTTACGTGGTGGCGCCACCGCAGATTATGGAGGGGCGTGGTGTGATTAAGCGGTTTTGGAATGGTCGGGTTCATGCTGTTCCAATGCACTCAGATTGGTTTTCGCCTAACACAGTGCACAGATTGGAGAGACAAGTGGTTCCGCATTTTTTCTCTGGAAAGTCTCCAGACCATACGGCAGAGCTATACATGGAATGTAGGAACTTGATTGTTGCCAAGTACATGGAAGATCCAGAGAAAAGATTATCGGTTTCTGACTGTAAGGGCCTTGTGGCTGGCATTCAGGAGGAAGACTTGACCCGAATTGTTCGTTTCCTGGATCACTGGGGAATCATTAATTACTGTGCTTCTTCTGTGCCAAATCGTGAGCCTTGGAGTAGCACATCCTACCTAAGGGAGGATTCGAATGGTGAGGTTCATGTGCCATCGGCTGCTTTGAAGTCCATTGATAGTTTGATCAAATTCGACAAGCCCAAATGTAGGCTGAAGGCGGCTGAGGTGTACTCATCCTTGTCATGTAATGGTGATGAGGACTCCGACTTGGACTGCAAAATTCGAGAGAGGTTATCTGATAATCGTTGCAATTATTGCTCTCGACCTCTTCCAATTGGGTATTATCAATCACAGAAGGAGGATAGGGGAGCTGAGTTTGTGTCACCTATTGGAAGAATGGGCTTTGTTGCTTGGGCTAAGAGGTTTGGTTGGAGTTTAGGGTTGTGGATGGGTCCTTCGATGTTGGTAGAATGTCTATTATTTCCCAGTGCCGACTCCTTTGTCGTCGGCAAACCATTACCTGCTCCCTCGACGTCGGAAAACCGTTACCAACTTCCTCGTCGTTGGAAAACAGTTATCGACTCCCTAGTCGTTAGCAAACAATTACCGACTCCCTCGTTGTTGACAAACCGTTACCGACTCCCTCGTTGTCGACAAACTGTTACAAACGCCCTCGTTGTTGGCAAACCGTTATCGGCTCATTGA 1083 0.4838 MFLENISHGQLQALSAVPADSPSLATSDQERSDGGGYVVAPPQIMEGRGVIKRFWNGRVHAVPMHSDWFSPNTVHRLERQVVPHFFSGKSPDHTAELYMECRNLIVAKYMEDPEKRLSVSDCKGLVAGIQEEDLTRIVRFLDHWGIINYCASSVPNREPWSSTSYLREDSNGEVHVPSAALKSIDSLIKFDKPKCRLKAAEVYSSLSCNGDEDSDLDCKIRERLSDNRCNYCSRPLPIGYYQSQKEDRGAEFVSPIGRMGFVAWAKRFGWSLGLWMGPSMLVECLLFPSADSFVVGKPLPAPSTSENRYQLPRRWKTVIDSLVVSKQLPTPSLLTNRYRLPRCRQTVTNALVVGKPLSAH* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0267 360 Gene3D - 66 153 IPR036388 -
Vvi18g0267 360 FunFam SWI/SNF complex subunit SMARCC2 isoform c 66 154 - -
Vvi18g0267 360 Pfam SWIRM domain 63 149 IPR007526 GO:0005515
Vvi18g0267 360 MobiDBLite consensus disorder prediction 17 38 - -
Vvi18g0267 360 SUPERFAMILY Homeodomain-like 59 161 IPR009057 -
Vvi18g0267 360 ProSiteProfiles SWIRM domain profile. 60 158 IPR007526 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-SWI3 Vvi18g0267 SWIRM 2.9e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0267 K11649 - vvi:100253973 511.531