Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0257 ATGAGTTTCTTGAGACCCTCTGTCTTGTACCAGCTCCTGTTCATGCACTCGTGGCTACAGTGGATGCCGTGTCAAAGTTGGGAGTTCCTTCGGTGGCCTGGGTTCGATGGGCTTTTGAGATGCTTAGTGGTGGTGCTTCTGTGGTCAACGTTTACGGAAATTAGCTTCATACGTTCCTCCTCTATGTACCCCACTCTTCATGTCCAAGATCGAGTCCTCATGGAAAGGGTGTCATATTATTTCAGACGTCCTGCTATTCATGAAATTGTAACTTTCAGAGCTCCAGTACGGCTACCAGGACACAGTGAAGATGAAATCTTTATTAAGAGGGTTGTTGCAAGAGCAGGAGACTTGGTTGAGGTTCGGGATGGGTCCCTTTATGTCAATGGGGATGTCCAGACTGAAGATTTTATCTTAGAGCAGCCAAATTACATATTGGACTTAACCGTGAGCTCCCCATCTGTCCCTTTTTATATTTCAATTGGACTACACTATTGTGCCAGCAAAGTGTGTTCTTGA 519 0.4547 MSFLRPSVLYQLLFMHSWLQWMPCQSWEFLRWPGFDGLLRCLVVVLLWSTFTEISFIRSSSMYPTLHVQDRVLMERVSYYFRRPAIHEIVTFRAPVRLPGHSEDEIFIKRVVARAGDLVEVRDGSLYVNGDVQTEDFILEQPNYILDLTVSSPSVPFYISIGLHYCASKVCS* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0257 172 PRINTS Bacterial leader peptidase 1 (S26A) family signature 50 66 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi18g0257 172 PRINTS Bacterial leader peptidase 1 (S26A) family signature 121 140 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi18g0257 172 PRINTS Bacterial leader peptidase 1 (S26A) family signature 107 119 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi18g0257 172 PANTHER SIGNAL PEPTIDASE I 38 147 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi18g0257 172 Pfam Signal peptidase, peptidase S26 41 140 IPR019533 GO:0004252|GO:0006465
Vvi18g0257 172 CDD S26_SPase_I 53 113 IPR019533 GO:0004252|GO:0006465
Vvi18g0257 172 SUPERFAMILY LexA/Signal peptidase 50 148 IPR036286 -
Vvi18g0257 172 NCBIfam signal peptidase I 40 140 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi18g0257 172 ProSitePatterns Signal peptidases I serine active site. 59 66 IPR019756 GO:0004252|GO:0016020
Vvi18g0257 172 Gene3D Umud Fragment, subunit A 47 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0257 Vvi-Chr18 2461631 2466833 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0257 K03100 - vvi:100854416 309.301