Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0250 ATGCTTAAAATTCAGAACTTTCAGAATAAATGGTCACTGGGATGGAATATTTTGGCCAGAATGTGCAGTTCTGGTGAAATAATAAAGGAGACTGCAGATCCAACTAAAAGGATATGTAAAATTATGATTTCTTGCCCAAAATTAGAGCTTGATACTTCCCTTAGTGAAAGTGGGATCAGGGTATCACCAATTGTGGTTGAGAATGTCCTCAAGAGATTTGAGAATGCTGGAATGCTAGCTTATCAATTTTTTGAATGGGCTGGAAAGCAACGAAATTACACGCATAGTATCAGAGCTTACCATACCATGATAGAGTCTCTGGCTAAGATAAGGCAGTATCAAATCATGTGGGATCTTGTAAATAAAATGAGGAGCCTGAAGATACTAAATGTTGAGACGTTTTGCATTATAATGAGAAAGTACGCGAGGTCTCAGAAGGTGAAAGAGGCAGTTTACACATTCAACATCATGGAAAAATATGATGTTCCTCCAAATCTGGCAGCATTTAATAGTCTTTTAAGTGCTCTGTGCAAGTCCAAGAATGTTGTAAAGGCTCAGGAGATCTTCAATGGTATGAAAGACCAATTTATTCCTGATTCAAAAACTTATAGTATATTACTTGAGGGGTGGGGAAAGGCTCCAAATCTGCCCAAGGCGAGAGAAATTTTCAGAGAAATGGTTGACATGGGTTGTGACCCTGATATTGTGACCTATGGTATCATGGTTGACATACTTTGCAAGGCAGGGCGGGTTGATGAAGCAGTTGGAATTGTTAAAGAAATGGATTCTAGTGTTTGTAAGCCAACATCTTTTATTTATAGTGTTCTGGTTCATACTTATGGGATAGAAAATCGAATCGAAGATGCCGTTTATACGTTTTTAGATATGGAAAGGAATGAAATTGAGGCTGATGTGGCAGTTTATAATGCATTGATTGGTGCTTTCTGTAAAGTAAACAAACTCAAGAATGCATATAGGGTTTTAAATGAGATGGATTGCAAGGGGATCAGACCTAATTCCAGGACCTGCAATATTATCCTAAACAGCTTAATCAGTTGTGGGGATACTGATGAGGCTTTTAGGGTCTTCCGCAGAATGATCAAGGTTTGTGATCCAGATGCAGACACATATACAATGATGATAAAAATGTTTTGTGAGAATGATAAGCTAGAGATGGCTCTTAAAGTGTGGAAATACATGAGGTTGAAGCAGTTTGTTCCTAGCATGCATACTTTTTCAGTTCTTATTAATGGACTGTGTAAAAAGGGTAATGCTTCCAAGGCTTGCATCTTATTGGAAGAGATGATAGAGAAGGGTATTCGGCCATCAAGTGTGACATTTGGGAAGTTAAAACAATTACTTATAAAGGAAGGGAGAGAAGATGTACTTGAATTTCTTCAAGAGAAAATGAATCTCTTGGTCAAGGAGCCTTTATGTGATCAAGAAATTATTGCTAATGAGCTGAATATACTGATCAATGTTGCTGAGTAG 1491 0.3763 MLKIQNFQNKWSLGWNILARMCSSGEIIKETADPTKRICKIMISCPKLELDTSLSESGIRVSPIVVENVLKRFENAGMLAYQFFEWAGKQRNYTHSIRAYHTMIESLAKIRQYQIMWDLVNKMRSLKILNVETFCIIMRKYARSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFIPDSKTYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIVKEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIKVCDPDADTYTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRPSSVTFGKLKQLLIKEGREDVLEFLQEKMNLLVKEPLCDQEIIANELNILINVAE* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0250 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Vvi18g0250 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Vvi18g0250 496 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 168 404 - -
Vvi18g0250 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Vvi18g0250 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Vvi18g0250 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Vvi18g0250 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Vvi18g0250 496 NCBIfam pentatricopeptide repeat 133 165 IPR002885 -
Vvi18g0250 496 NCBIfam pentatricopeptide repeat 236 269 IPR002885 -
Vvi18g0250 496 NCBIfam pentatricopeptide repeat 272 304 IPR002885 -
Vvi18g0250 496 NCBIfam pentatricopeptide repeat 168 195 IPR002885 -
Vvi18g0250 496 NCBIfam pentatricopeptide repeat 410 443 IPR002885 -
Vvi18g0250 496 NCBIfam pentatricopeptide repeat 202 235 IPR002885 -
Vvi18g0250 496 NCBIfam pentatricopeptide repeat 342 368 IPR002885 -
Vvi18g0250 496 NCBIfam pentatricopeptide repeat 307 339 IPR002885 -
Vvi18g0250 496 NCBIfam pentatricopeptide repeat 376 408 IPR002885 -
Vvi18g0250 496 SUPERFAMILY TPR-like 95 436 IPR011990 GO:0005515
Vvi18g0250 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Vvi18g0250 496 Pfam PPR repeat 133 161 IPR002885 -
Vvi18g0250 496 Pfam PPR repeat 272 300 IPR002885 -
Vvi18g0250 496 Pfam PPR repeat 99 127 IPR002885 -
Vvi18g0250 496 Pfam PPR repeat family 164 209 IPR002885 -
Vvi18g0250 496 Pfam PPR repeat family 372 421 IPR002885 -
Vvi18g0250 496 Pfam PPR repeat family 304 350 IPR002885 -
Vvi18g0250 496 Gene3D Tetratricopeptide repeat domain 265 350 IPR011990 GO:0005515
Vvi18g0250 496 Gene3D Tetratricopeptide repeat domain 351 478 IPR011990 GO:0005515
Vvi18g0250 496 Pfam PPR repeat 229 261 IPR002885 -
Vvi18g0250 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 369 IPR002885 -
Vvi18g0250 496 Gene3D Tetratricopeptide repeat domain 195 264 IPR011990 GO:0005515
Vvi18g0250 496 Gene3D Tetratricopeptide repeat domain 48 194 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0250 Vvi-Chr18 2413199 2414689 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0250 103 496 Glycosyltransferase AT1G05670 25.891 4.57e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0250 - - vvi:100259211 983.015