Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0249 ATGGAGCTGCAACTGCCGGAGTGCCCAGTCTGCCTCCAAACCTACGACACCGATCAAGCAATCCCTCGCGTACTCGCCTGCGGACACACGGCTTGCGAGGCATGCATAACCCACCTCCCACAACGATTCTTGGACACCATTCGCTGCCCGGCATGTACACAACTCGTCAAGTTCTCTCACCTCCAAGGCCCATCGGCTCTACCCAAGAACATCGACCTTCTCAGGCTCTGTCTTAGCGAGGACTCTGATTATCAGAAACCCCAGAAACGACCCATCACCAGTCACTATGAATTTCTACCTCGCTTGTGGTCTGACCAGTTTTATTCCGTTTGGAAGGACTGGGTTCTTCCGAACGACGCCGTTTCGGTTGAACCCAGAGGTGGGAAGGATTTTTGTGATGTGATTCATGGAAGAATTGCTTCTTCTTCTTCTTCTTCGCCGTCGGTTATTCGGTGGTGGATGAAAGAGAATCAAAATGTGAGTCTTGTTAGAATTGCTTCTTTATCGTTTGTGAATGATTCTGTGATTAGTTTTAGTTATATGGCGCGAATCATGAACTGTTTGAATGGAATGAAGGAGGAGAAAAGATATGAATTGGGTTTGATTTTGAGACAGCGCAAAACCTGTGGAGTTTATGGACTGTGGTATGATTTGGATGATCAATGGATGTATCTTGTATGTGAGCGGTGGGAAGGTGACCTTGTGGAAAAAATTAGTGAACTGAAAAATGAGGTTGTTGGTGGGAATGACAAAAGTTTGCTGAATTCAGCTATAGAAGATGGGATATTCTGTTTTGCAATGATGGGTATGGAGATATGCAAAGCAATTATTGGCTTACATTCAGAAGGACTAGTTAGTGGTTGTTTAGCACCATCATGCTTTAATTTTGATGGTCTTGGCCATGTTTTTGTTGATTTGAATGAGATGTTGGTGACGGGAAGGAAGATTCATAGGAGCCTTGTGGAGAGTGTTTCAGGTAGGAGGAGAATTGATGATAAGGAAATGGGAATAATATCAACCAATCTAATAAAAAGAGAGGCATTTCTGAGCCCAGAAGTGTTCATTGAGTTATTGCAGAAAGAGGGCATTGAACTAGAATGCGACAGTTTAAGTTATTCAGTTGGATATAGCTCTGATGTTTGGTCATTAGCTTGTATGTTGCTCAGGCTTTTTATTGGAAACCCATTCACTGAACTCCATATAAGAAGTGCAAAAAGGCATTCTGATTATTTAGAAGTGTACATGGATTGTAGGGAGGAAGTCAGTTCTTTGTTGGAAACTAAACTGGGCACAAATTTTGTAGCACTGCAAAAGATTCTCTGTGAATGTTTGAATTTGGATCCAAAAAGTCGTCCACTTGTAGCTGATGTGTGGAAATGCATTAGGGAATTGGTTATAAAACCTCAATTTGATATTATGGTCAGTCAAGAGGGAACAGTTAATGAGGGCAACAATGTGCACTGCTTGGTTCTTGGAGAATTGTGTCAGTTGCCCAAGGAAACTAATAAAGGATCAAAAGCAGTGAAGACAGATGAAAGCGGCAGAGAAAATGTTGATCAAGCTGGGGAATTGCAGGATGATAAAGATTTCATTGAGGGTCTCTCTGGATCTACCGTCAAATCTATAAATCTGCAAGGCCATCTTGATTGTATTACAGGATTAGCTGTTGGAGGGGGGTTCCTGTTTAGCTCCTCCTTCGATAAAACAATCCATGTTTGGTCTTTGCAGGACTTTACCCTTGTACATCAATTTAGAGGTCATGAGCATAGAGTCATGGCTGTAGTTTTTGTGGATGAAGAACAACCTTTGTGCATTAGTGGTGATATCGGAGGTGGCATTTTTGTCTGGGGAATTAGCATCCCTCTGGGGCAAGAACCATTAAAGAAATGGTTTGAGCAAAAGGATTGGCGCTATAGTGGTATTCATGCCTTGGCAATTTCTGGAACTGGATATCTCTATACTGGCAGTGGAGATAAGTCAATAAAAGCATGGTCATTGCAGGATTGCACCCTATCATGCACTATGAATGGTCATAAATCAGTTGTGTCTGCGCTAGCAGTTTCTGACGGTGTTCTTTACAGTGGGAGTTGGGATGGGACCATCAGGCTGTGGTCTCTTAATGATCATAGTCCTTTGACCGTATTGGGGGAAGACACACCTGGAAATGTGATCTCAGTTTTGTCTCTAAAAGCTGACCACCATATGCTTCTTGCAGCTCATGAGGACGGATGCTTAAAGATCTGGAGGAATGATGTGTTTATGAAATCCATACAAGCCCATGATGGTGCTGTTTTTGCTGTTGCCATGGGAGGGAAATGGTTGTTCACAGGAGGTTGGGACAAGAGTGTCAATGTACAGGAGATATCAGGAGATGATCTTCAAATAGAAGCATTGCCAGTTGGATCTATTGCTTCCGACTCCGCCGTAACTGCACTGTTATACTGGCAAGGAAAGCTTTTTGTTGGCTGTGCTGATAGAATTATCAAGGTTTGA 2493 0.4284 MELQLPECPVCLQTYDTDQAIPRVLACGHTACEACITHLPQRFLDTIRCPACTQLVKFSHLQGPSALPKNIDLLRLCLSEDSDYQKPQKRPITSHYEFLPRLWSDQFYSVWKDWVLPNDAVSVEPRGGKDFCDVIHGRIASSSSSSPSVIRWWMKENQNVSLVRIASLSFVNDSVISFSYMARIMNCLNGMKEEKRYELGLILRQRKTCGVYGLWYDLDDQWMYLVCERWEGDLVEKISELKNEVVGGNDKSLLNSAIEDGIFCFAMMGMEICKAIIGLHSEGLVSGCLAPSCFNFDGLGHVFVDLNEMLVTGRKIHRSLVESVSGRRRIDDKEMGIISTNLIKREAFLSPEVFIELLQKEGIELECDSLSYSVGYSSDVWSLACMLLRLFIGNPFTELHIRSAKRHSDYLEVYMDCREEVSSLLETKLGTNFVALQKILCECLNLDPKSRPLVADVWKCIRELVIKPQFDIMVSQEGTVNEGNNVHCLVLGELCQLPKETNKGSKAVKTDESGRENVDQAGELQDDKDFIEGLSGSTVKSINLQGHLDCITGLAVGGGFLFSSSFDKTIHVWSLQDFTLVHQFRGHEHRVMAVVFVDEEQPLCISGDIGGGIFVWGISIPLGQEPLKKWFEQKDWRYSGIHALAISGTGYLYTGSGDKSIKAWSLQDCTLSCTMNGHKSVVSALAVSDGVLYSGSWDGTIRLWSLNDHSPLTVLGEDTPGNVISVLSLKADHHMLLAAHEDGCLKIWRNDVFMKSIQAHDGAVFAVAMGGKWLFTGGWDKSVNVQEISGDDLQIEALPVGSIASDSAVTALLYWQGKLFVGCADRIIKV* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0249 830 Pfam RING-type zinc-finger 8 50 IPR027370 -
Vvi18g0249 830 SUPERFAMILY Protein kinase-like (PK-like) 151 464 IPR011009 -
Vvi18g0249 830 ProSiteProfiles Protein kinase domain profile. 96 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0249 830 SMART ring_2 8 52 IPR001841 -
Vvi18g0249 830 SMART WD40_4 668 705 IPR001680 GO:0005515
Vvi18g0249 830 SMART WD40_4 577 617 IPR001680 GO:0005515
Vvi18g0249 830 SMART WD40_4 750 787 IPR001680 GO:0005515
Vvi18g0249 830 SMART WD40_4 537 574 IPR001680 GO:0005515
Vvi18g0249 830 SMART WD40_4 623 665 IPR001680 GO:0005515
Vvi18g0249 830 SMART WD40_4 708 749 IPR001680 GO:0005515
Vvi18g0249 830 SUPERFAMILY RING/U-box 7 64 - -
Vvi18g0249 830 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 583 IPR001680 GO:0005515
Vvi18g0249 830 SUPERFAMILY WD40 repeat-like 542 830 IPR036322 GO:0005515
Vvi18g0249 830 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 675 707 - -
Vvi18g0249 830 Gene3D Transferase(Phosphotransferase) domain 1 206 466 - -
Vvi18g0249 830 Pfam WD domain, G-beta repeat 543 574 IPR001680 GO:0005515
Vvi18g0249 830 Pfam WD domain, G-beta repeat 674 705 IPR001680 GO:0005515
Vvi18g0249 830 CDD RING-HC_TRIM32_C-VII 6 55 - -
Vvi18g0249 830 Gene3D - 523 625 IPR015943 GO:0005515
Vvi18g0249 830 Gene3D - 626 830 IPR015943 GO:0005515
Vvi18g0249 830 ProSiteProfiles Trp-Asp (WD) repeats profile. 675 714 IPR001680 GO:0005515
Vvi18g0249 830 PRINTS G protein beta WD-40 repeat signature 561 575 IPR020472 -
Vvi18g0249 830 PRINTS G protein beta WD-40 repeat signature 652 666 IPR020472 -
Vvi18g0249 830 PRINTS G protein beta WD-40 repeat signature 692 706 IPR020472 -
Vvi18g0249 830 ProSiteProfiles Zinc finger RING-type profile. 8 53 IPR001841 -
Vvi18g0249 830 PANTHER - 5 830 IPR044715 -
Vvi18g0249 830 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0249 Vvi-Chr18 2406583 2411502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0249 559 777 Acyl Lipid Metabolism Gene Families AT3G18860 30.263 3.13e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0249 - - csin:114288437 977.622