Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0248 ATGGCCGCGGCGGCGTCTGCTGTTCTGAATCCGCCCTTCATCACTCCTGAGCAACCTTCGAGACGGCCCAATGCCATCTTTTGGACCAGACCCATTTCATATTCTTCGTCTCTTTCCCTTTCTCTGTCTCGGCGGCAACGGCGTCTTTCTAGGCCTGGACCCCTAGTTGCGGTCGCTTCTCTGAAGGAAAATTTGGGTCGTCTGAGGAAGAATTGGAGTGACCTTACAAGCCTAAACTACTGGGTGGTTAGGGACTACTACCGTCTCGTAAACTCGGTTAACGCCCTCGAACCGCAGATTCAGAGACTCTCTGATGAACAGTTGGCTGCAAAAACTGTGGACTTCCGTGTCCGGCTGAGACAAGGAGAGACGCTTGCGGATATTCAAGCTGAGGCATTTGCAGTTGTCCGGGAGGCTGCGAGGAGGAAGCTTGGAATGCGCCATTTTGATGTCCAGATCATTGGTGGAGCTGTGCTTCATGATGGGTCCATTGCTGAGATGAAAACGGGGGAAGGAAAAACCTTGGTTTCCACATTAGCAGCCTATCTCAATGCCCTCACTGGTGAGGGTGTTCATGTGGTAACTGTCAATGATTATCTGGCCCAACGTGATGCTGAGTGGATGGGTCGTGTTCATCGTTTCCTAGGTCTTTCAGTGGGTCTTATTCAGAGGGGGATGACATCAGAAGAGAGAAGATCCAACTATGGATGTGATATAACATATACCAATAATTCAGAACTGGGCTTTGATTATTTACGAGATAATCTTGCTGGAACTAGTGGGCAACTAGTGATGAGATGGCCAAAGCCATTTCATTTTGCCATAGTTGATGAAGTTGATTCAGTTCTTATTGATGAAGGAAGAAATCCTTTGTTAATAAGTGGTGAGGCTAGTAAAGATGCTGCACGATATCCTGTTGCTGCCAAAATAGCTGAGCTGCTTATTCGAGGACTTCATTATAATGTGGAGCTTAAGGATAATTCAGTGGAGTTGACTGAGGAAGGAATTGCACTTGCTGAGATGGCTCTTGAAACTAATGACCTATGGGATGAAAATGATCCTTGGGCTAGGTTTGTGATGAATGCTTTGAAGGCCAAAGAGTTCTATCGGCGGAATGTTCAATACATTGTTAGGAATGGGAAGGCTCTTATTATCAATGAGTTGACTGGGAGAGTTGAAGAAAAGCGAAGATGGTCTGAGGGGATTCACCAGGCTGTAGAGGCTAAAGAAGGTCTGAAGATTCAGGCTGATTCGGTTGTGGTGGCACAAATCACGTATCAATCTCTGTTTAAGCTCTATCCGAAGCTGTCAGGGATGACAGGGACTGCGAAAACTGAAGAGAAAGAGTTCTTAAAAATGTTCCAGATGCCTGTTATTGAAGTGCCCCCAAATCTGCCAAATATTCGTAAAGATTTACCCATCCAAGCTTTTGCGACTGCTCGTGGAAAGTGGGAAAATGTTCGTGAAGAAGTTGAATACATGTTCAGACAGGGTCGTCCTGTTTTAGTTGGCACCACTAGTGTTGAGAATTCAGAATATTTGTCCGATCTGCTGAAGGAACGAAAAATCCCCCACAATGTCCTCAATGCACGACCTAAGTATGCTGCAAGGGAGGCTGAAATTGTTGCTCAAGCAGGGCGGAAATTTGCTATCACCATTTCTACAAATATGGCTGGCAGAGGCACTGACATAATCCTAGGAGGAAATCCAAAAATGCTTGCAAAAGAAGTTATAGAAGACAGCTTACTTTCATTCTTGACTCAAGAAGCTCCCAATGTTGAAGTTGATGGCGAGCCAACTTCTCAAAAGGTATTGTCAAAGATAAAGATTGGTTCTGCTTCACTTGCTTTGCTAGCTAAGACAGCCCTAATGGCTAAATATGTGAGCAAAGGTGAGGGTAAGAGCTGGACATATCAAAAGGCAAAATCTATGATCTCAGAATCTGTGGAAATGAGTCAGTCCATAGATTGGAAAGAGCTAGAGAAGCTTGCTAATGAACAGTCTGAGATGTACCCTCTTGGCCCTACTATAGCACTAGCTTATCTATCAGTTTTGAAGGATTGTGAAGCACACTGCTTGAGTGAAGGATCCGAAGTGAAAAGGCTTGGGGGGCTTCATGTGATTGGCACATCCTTGCATGAATCTCGAAGGATTGATAACCAGCTTCGTGGTAGAGCAGGCAGACAAGGGGATCCTGGATCAACACGGTTTATGGTGAGCTTGCAGGATGAGATGTTTCAGAAATTTAATTTTGATACTGAGTGGGCTGTAAGACTTATATCAAAGATTACAAATGATGAAGATATACCAATTGAAGGTGATGCAATTGTAAAACAGCTCTTGGCCCTTCAAATCAATGCGGAGAAGTACTTCTTTGGCATAAGAAAGAGCTTGGTTGAGTTCGATGAAGTATTAGAGGTGCAAAGAAAGCATGTCTATGACCTTAGGCAACTGATTTTAACAGGTGACATTGAAAGTTGTTCCCAACATGTATTCCAGTACATGCAAGCAGTGGTAGATGAAATTGTCTTTGGAAATGTTAATGCACTGAAGCATCCGAGTAAGTGGAATTTGGGTAAGCTGCTAAAGGAATTTATTGGAATTTCAGGGAGGCTATTGGATGACTCATTTGTAGGGATTTCTGAAGAAACTTTACTGAAGGCCCTTGCACAGCTTCATGAATTGAGTTCTGTAGATATTAACAACTTTTACCTTCCAAACTTGCCAACACCTCCAAATGCCTTCAGAGGAATCCGCAGGAAGACCTCTTCATTGAAACGTTGGCTTGCCATATGCTCTGATGATTCAGCTAGGGATGGAAGGTATCGAGCAACTGCTAATCTTCTTCGCAAGTACCTTGGAGATTTTCTAATTGCTTCATATTTAGATGCTGTACAAGAATCTGGTTATGATGATGCATATGTCAAGGAGATAGAGAGGGCAGTACTCGTGAAGACTTTAGATTGTTTCTGGAGGGATCATCTTATAAACATGAACAGGCTCAGCTCAGCGGTAAATGTGAGGAGTTTCGGCCACAGAAATCCACTCGAAGAATACAAGATTGATGGATGTCGGTTTTTCATATCAATGCTCAGTGCAACACGGCGGCTAACTGTAGAATCACTCTTGCGGTACTGGTCATCACCGATGGAGTCACAAGAGCTGTTTGTGTCATAG 3177 0.4394 MAAAASAVLNPPFITPEQPSRRPNAIFWTRPISYSSSLSLSLSRRQRRLSRPGPLVAVASLKENLGRLRKNWSDLTSLNYWVVRDYYRLVNSVNALEPQIQRLSDEQLAAKTVDFRVRLRQGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMTSEERRSNYGCDITYTNNSELGFDYLRDNLAGTSGQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKIAELLIRGLHYNVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRNVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPPNLPNIRKDLPIQAFATARGKWENVREEVEYMFRQGRPVLVGTTSVENSEYLSDLLKERKIPHNVLNARPKYAAREAEIVAQAGRKFAITISTNMAGRGTDIILGGNPKMLAKEVIEDSLLSFLTQEAPNVEVDGEPTSQKVLSKIKIGSASLALLAKTALMAKYVSKGEGKSWTYQKAKSMISESVEMSQSIDWKELEKLANEQSEMYPLGPTIALAYLSVLKDCEAHCLSEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDIPIEGDAIVKQLLALQINAEKYFFGIRKSLVEFDEVLEVQRKHVYDLRQLILTGDIESCSQHVFQYMQAVVDEIVFGNVNALKHPSKWNLGKLLKEFIGISGRLLDDSFVGISEETLLKALAQLHELSSVDINNFYLPNLPTPPNAFRGIRRKTSSLKRWLAICSDDSARDGRYRATANLLRKYLGDFLIASYLDAVQESGYDDAYVKEIERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLRYWSSPMESQELFVS* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0248 1058 NCBIfam preprotein translocase subunit SecA 93 863 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g0248 1058 Gene3D - 297 417 - -
Vvi18g0248 1058 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 317 IPR014001 -
Vvi18g0248 1058 Gene3D - 466 772 IPR027417 -
Vvi18g0248 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 753 IPR027417 -
Vvi18g0248 1058 CDD SF2_C_secA 469 740 IPR044722 -
Vvi18g0248 1058 ProSiteProfiles SecA family profile. 68 772 IPR014018 -
Vvi18g0248 1058 Pfam SecA Wing and Scaffold domain 770 1045 IPR011116 GO:0016020|GO:0017038
Vvi18g0248 1058 Pfam SecA DEAD-like domain 83 450 IPR011115 GO:0005524|GO:0016020|GO:0017038
Vvi18g0248 1058 CDD DEXDc_SecA 107 463 - -
Vvi18g0248 1058 FunFam Protein translocase subunit SecA 916 1045 - -
Vvi18g0248 1058 Gene3D Helical scaffold and wing domains of SecA 918 1046 - -
Vvi18g0248 1058 Gene3D Helical scaffold and wing domains of SecA 775 896 - -
Vvi18g0248 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 464 IPR027417 -
Vvi18g0248 1058 FunFam Protein translocase subunit SecA 86 307 - -
Vvi18g0248 1058 SMART SecA_PP_bind_2 296 407 IPR011130 GO:0016020|GO:0017038
Vvi18g0248 1058 FunFam Preprotein translocase SecA subunit 297 417 - -
Vvi18g0248 1058 FunFam Protein translocase subunit SecA 775 894 - -
Vvi18g0248 1058 Gene3D - 87 464 IPR027417 -
Vvi18g0248 1058 SUPERFAMILY Pre-protein crosslinking domain of SecA 295 416 IPR036670 GO:0016020|GO:0017038
Vvi18g0248 1058 SUPERFAMILY Helical scaffold and wing domains of SecA 776 1055 IPR036266 -
Vvi18g0248 1058 ProSitePatterns SecA family signature. 551 566 IPR020937 GO:0006605|GO:0006886|GO:0016020
Vvi18g0248 1058 SMART SecA_DEAD_2 71 451 IPR011115 GO:0005524|GO:0016020|GO:0017038
Vvi18g0248 1058 Pfam SecA preprotein cross-linking domain 303 407 IPR011130 GO:0016020|GO:0017038
Vvi18g0248 1058 Hamap Protein translocase subunit SecA [secA]. 67 1048 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g0248 1058 PRINTS SecA protein signature 166 180 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g0248 1058 PRINTS SecA protein signature 128 152 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g0248 1058 PRINTS SecA protein signature 235 255 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g0248 1058 PRINTS SecA protein signature 182 192 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g0248 1058 PRINTS SecA protein signature 425 442 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g0248 1058 PRINTS SecA protein signature 462 475 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g0248 1058 PRINTS SecA protein signature 388 410 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g0248 1058 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 52 1055 IPR000185 GO:0005524|GO:0006605|GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0248 Vvi-Chr18 2359940 2405390 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0248 K03070 - vvi:100248990 2045.78