Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0246 ATGGCAATTCCAGTGATTGACTTCTCGAAGCTCAACGGCGAGGAGAGAGCCAAGACGATGGCTCGGATCGCTAATGGATGCGAAGAGTGGGGATTTTTCCAGCTGGTAAACCATGGAATTCCTGAGGAGCTTTTGGAGAGGGTGAAGAAGGTGTGCTCCGAGTTTTATAAGCTGGAAAGGGAGGAAGGTTTCAAGGACTCGAGGCCAATCAGGTTGCTGAACGAGTTGGTGGAAAAGAAGAGCGGCGAGAAGTTGGAGAATGTGGACTGGGAGGATGTCATCACTCTCGTAGACGATAACGAGTGGCCCTCTAAAACCCCGGGATTCAAGGAAACCATGGCGGAGTACCGCAAAGAACTGAAGAAACTGGCGGAGAAGGTGATGGAAGTAATGGACGAAAACCTGGGCTTACCAAAGGGGTACATCAAGAAGGCATTCAACGATGGAGAAGGAGACAACGCCTTCTTCGGCACCAAGGTGAGCCACTATCCACCATGCCCTCATTCTGAGCTCCTGAATGGTCTGCGAGCCCACACCGACGCTGGCGGCGTCATCCTGCTCTTCCAGGATGACAAGGTGAAAGGCCTCCAAATCCTCAAAGATGGGGAATGGATTGACGTCCAACCACTGCCAAACTCCATAGTCATCAACACTGGAGATCAGATTGAGGTTCTAAGCAATGGCAAATACAAGAGTGTGTTGCACAGGGTTATGACCAGCCCAGATGGGAACAGAAGATCAATTGCCTCGTTCTACAATCCCCCTCTCAAAGCCACCATAGCACCTGCACCCCAACTTGTGGAAAAAGCTAACCAAGATGATCTAGAGATTGTTCAAGCTTACCCCAAGTTTGTGTTTGGTGACTACATGTCTGTGTATGCTGAGCAGAAGTTCCTCCCAAAGGAACCAAGGTTCCACGCTGTGGGGGCTATGTAA 936 0.5032 MAIPVIDFSKLNGEERAKTMARIANGCEEWGFFQLVNHGIPEELLERVKKVCSEFYKLEREEGFKDSRPIRLLNELVEKKSGEKLENVDWEDVITLVDDNEWPSKTPGFKETMAEYRKELKKLAEKVMEVMDENLGLPKGYIKKAFNDGEGDNAFFGTKVSHYPPCPHSELLNGLRAHTDAGGVILLFQDDKVKGLQILKDGEWIDVQPLPNSIVINTGDQIEVLSNGKYKSVLHRVMTSPDGNRRSIASFYNPPLKATIAPAPQLVEKANQDDLEIVQAYPKFVFGDYMSVYAEQKFLPKEPRFHAVGAM* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0246 311 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 154 254 IPR005123 -
Vvi18g0246 311 FunFam 1-aminocyclopropane-1-carboxylate oxidase 1 2 311 - -
Vvi18g0246 311 Coils Coil 113 133 - -
Vvi18g0246 311 Gene3D - 2 311 IPR027443 -
Vvi18g0246 311 SUPERFAMILY Clavaminate synthase-like 1 305 - -
Vvi18g0246 311 Pfam non-haem dioxygenase in morphine synthesis N-terminal 3 99 IPR026992 -
Vvi18g0246 311 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 3 293 - -
Vvi18g0246 311 Pfam 2OG-Fe(II) oxygenase superfamily 161 254 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0246 Vvi-Chr18 2347198 2348427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0246 1 271 Glycosyltransferase AT5G59530 31.449 3.25e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0246 K05933 - vvi:100252394 635.18