Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0233 ATGTCTTCGTCTTCCCTGAGCTCCATTGACCTGCACAGGATTTTCCACAAGCTTGACCGAAATGGTGATGGCCTGGTGAGCCTTGGGGAGCTCAACTGGCTGCTTGAGAGAGTTGGTGTGCAGTACAGCCTGGATGAGCTGGAGAGCCTCGTGGGGAACACCACCCTCGATTTTAATGAGTTCTTGGTGTTCTATGAATCCATTTCGACCGAGAAAAAGGGAGAGAGCGAGGTGGAGGAAGAGGAGGTGAAGGAGGAGGAGGAGGAGGAGGACGTGGGTGACCTAGCGAAGGCTTTCAGGGTGTTTGACTTGAACGGAGATGGGTTCATCACATGTGATGAGCTTCAGAGCGTGCTGTCCAGACTGGGAATGTGGGAGGAGAATGGTGGAGGTGATTGCAGGAGCATGATCAAGGTGTATGACACCAACTCTGACGGGGTTCTTGATTTTGAGGAGTTCAAGAACATGATGCTCCTCAGTACCATCTGA 489 0.5194 MSSSSLSSIDLHRIFHKLDRNGDGLVSLGELNWLLERVGVQYSLDELESLVGNTTLDFNEFLVFYESISTEKKGESEVEEEEVKEEEEEEDVGDLAKAFRVFDLNGDGFITCDELQSVLSRLGMWEENGGGDCRSMIKVYDTNSDGVLDFEEFKNMMLLSTI* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0233 162 CDD EFh 94 157 IPR002048 GO:0005509
Vvi18g0233 162 ProSitePatterns EF-hand calcium-binding domain. 19 31 IPR018247 -
Vvi18g0233 162 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Vvi18g0233 162 Pfam EF-hand domain pair 95 157 IPR002048 GO:0005509
Vvi18g0233 162 MobiDBLite consensus disorder prediction 71 91 - -
Vvi18g0233 162 ProSitePatterns EF-hand calcium-binding domain. 141 153 IPR018247 -
Vvi18g0233 162 Gene3D - 2 159 - -
Vvi18g0233 162 ProSiteProfiles EF-hand calcium-binding domain profile. 128 162 IPR002048 GO:0005509
Vvi18g0233 162 SMART efh_1 10 38 IPR002048 GO:0005509
Vvi18g0233 162 SMART efh_1 94 122 IPR002048 GO:0005509
Vvi18g0233 162 SMART efh_1 132 160 IPR002048 GO:0005509
Vvi18g0233 162 Pfam EF hand 14 31 IPR002048 GO:0005509
Vvi18g0233 162 SUPERFAMILY EF-hand 11 159 IPR011992 -
Vvi18g0233 162 ProSitePatterns EF-hand calcium-binding domain. 103 115 IPR018247 -
Vvi18g0233 162 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 55 157 - -
Vvi18g0233 162 FunFam Probable calcium-binding protein CML44 7 68 - -
Vvi18g0233 162 ProSiteProfiles EF-hand calcium-binding domain profile. 90 125 IPR002048 GO:0005509
Vvi18g0233 162 Coils Coil 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0233 Vvi-Chr18 2200795 2201283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0233 1 158 EF-hand Containing Proteins AT1G21550 47.170 6.66e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0233 K13448 - vvi:100253886 285.034