Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0229 ATGAACTGCGCGCAGAGAGAGGAGGAAACAGAGAAGAAACTGAAGAGAATGAAAATAACGTGGAAGAAGCAGAGTAAGGGCAGTAACAGGAAGCGGTCACTGGCTGCTTCATCAAATCTTCCGTTTGAAGATGAAGAAGCAGAGCAACCTACTAGTACCATGGAGGCGAAGGTGGAGGAGGAAGGGGATTTTCGTGGCCTCAAAACCCTAGATTCTTCCGACGGCCCATCCACCCAACAACTCGCCGACTCCTTTCAAGCTCAAGGAGACAAGCTTGCTGAGGGTGGAAAGTATCGTGAAGCACTAGGGAAGTGGGAGACTGCTCTTACTTTGATGCCTGGAAAAGCAGTTTTACATGAACAAAAGGCTCAAGTTTTACTTGAGATAGGAGATGCATGGAATGCTTTGAAGGCAGCAACTCGGGCTACTGAATTGGAACCATCATGGGCTGAGGCTTGGATTACCCTTGGTAGAGCACAGTTAAACTTTGGGGAGCCTGATATTGCCATCAAAAGCTTTGACAGGGCATTAGCTATCAAGCCTAATTCTGAGGAGGCTCAAGATGACAGAAAAAGTGCATTTCATCTTGTAAAGAGGCGTAAGCAGCTGCATTCATCAGGTCTGAGTGATACCGAAAATCGTTTTGTGGTTGGTGACAAGACCTAA 666 0.4685 MNCAQREEETEKKLKRMKITWKKQSKGSNRKRSLAASSNLPFEDEEAEQPTSTMEAKVEEEGDFRGLKTLDSSDGPSTQQLADSFQAQGDKLAEGGKYREALGKWETALTLMPGKAVLHEQKAQVLLEIGDAWNALKAATRATELEPSWAEAWITLGRAQLNFGEPDIAIKSFDRALAIKPNSEEAQDDRKSAFHLVKRRKQLHSSGLSDTENRFVVGDKT* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0229 221 Gene3D Tetratricopeptide repeat domain 74 213 IPR011990 GO:0005515
Vvi18g0229 221 MobiDBLite consensus disorder prediction 50 68 - -
Vvi18g0229 221 MobiDBLite consensus disorder prediction 1 79 - -
Vvi18g0229 221 Pfam Tetratricopeptide repeat 150 186 - -
Vvi18g0229 221 PANTHER OSMOSIS RESPONSIVE FACTOR 17 220 - -
Vvi18g0229 221 MobiDBLite consensus disorder prediction 1 16 - -
Vvi18g0229 221 ProSiteProfiles TPR repeat profile. 150 183 IPR019734 GO:0005515
Vvi18g0229 221 SMART tpr_5 82 115 IPR019734 GO:0005515
Vvi18g0229 221 SMART tpr_5 150 183 IPR019734 GO:0005515
Vvi18g0229 221 SMART tpr_5 116 149 IPR019734 GO:0005515
Vvi18g0229 221 ProSiteProfiles TPR repeat region circular profile. 150 182 - -
Vvi18g0229 221 SUPERFAMILY TPR-like 80 200 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0229 Vvi-Chr18 2130873 2138450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0229 89 187 EF-hand Containing Proteins AT2G32450 32.323 3.00e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0229 - - vvi:100241993 439.884