Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0201 ATGGCTAATAATGCAGCAGCATGTGTTGAAAGGGCAACGAGTGATATGTTGATTGGTCCAGACTGGGCAATAAACATCGAGCTATGTGATATCATTAACATGGATCCTGGGCAAGCAAAGGATGCCCTGAAGATACTCAAGAAGCGCCTGGGGAGTAAAAATCCTAAGATACAACTTCTTGCTCTGTTTGTATTGGAGACTCTCAGCAAAAATTGCGGGGAGAATGTGTTTCAGCAGATTGTTGAGCGTGATATCTTACATGAGATGGTCAAAATAGTAAAGAAGAAGCCAGACTTGAATGTAAGGGAAAAGATTCTAATTTTGATAGATACGTGGCAAGAAGCTTTTGGGGGACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACGTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTTACTCCACCCCAAACCCAGCCAATAATTCACCCTACTTCAGTCTACGATGATGCAGCTGTTCAAGCCTCTCTTCAGTCTGATTCTTCTGGCCTCAGCTTGCTAGAGATGCAAAATGCTCAGGGACTCGCAGATGTATTAATGGAAATGCTTGGTGCTGTGGATCCACGGAAGCCAGAGAGTGTGAAGGACGAAGTGATTGTTGACCTTGTTGACCAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCGTGTGTTGCGCAAGCATGATGATATAGCTAAAGGTGCTCCTGCTGTGGCAGTAGGAACAACAGAATCTTCTGCTCCTGTACTTGTGAACGTGACTCATGAGGATGATGAATCAGAAGATGATTTTGCCCAGTTAGCCCACAGGTCACAGGGCAGGAAATCAGCCAATGCAAAGCCTGAACCACTGCGAGTCAGCCCACTTATTCCTCCTCCGCCCTCATCAAAGAAGCCAACTAGTGCAGATTCCAGCATGATTGATTATCTCAGTGGTGATGTCTATAAGTCTAAGCCTGAAAGATCCCCTGAAACATCAGAACCCACGCCCTATGCTGTCCCATCGCATTCTAACAGTACAAACTCCACCTCTCCATGGACGCCAGCATTATCTTCCTCATCCCCCCCCTCTCATTTCATAAATCCTACTGCATCACCCATGTTCACTGCACATCCCGTGTATGATGAACCAGCTCCAATGTCAAAATCTGCCGATCCACTACCCTCTGCTCCTTGGGATGCCCCCTCTCCGAACAGCATTCCCCCCCCACCTTCCAAGTATAACCAGAGACAACAGTTCTTTGAGCAACAACATGCTTCTCTGGGAAGCCCATATTCAAGTAGTGGATCCTCCTCTGACAGTTTAGTGGGACAGACCCAGAATCTGTCAATTAACTCCTCGTCCACCACGAAACAAGTGAAGCAGGAGGATGCCCTGTTCAAAGATCTGGTTGATTTTGCAAAAGCCAAGTCTTCTTCATCATCCAAGCCCAATAGATCATTTTGA 1545 0.4628 MANNAAACVERATSDMLIGPDWAINIELCDIINMDPGQAKDALKILKKRLGSKNPKIQLLALFVLETLSKNCGENVFQQIVERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELTSAGVEFPPRAENSVPLFTPPQTQPIIHPTSVYDDAAVQASLQSDSSGLSLLEMQNAQGLADVLMEMLGAVDPRKPESVKDEVIVDLVDQCRNYQKRVMLLVNDTVDEELLCQGLALNDNLQRVLRKHDDIAKGAPAVAVGTTESSAPVLVNVTHEDDESEDDFAQLAHRSQGRKSANAKPEPLRVSPLIPPPPSSKKPTSADSSMIDYLSGDVYKSKPERSPETSEPTPYAVPSHSNSTNSTSPWTPALSSSSPPSHFINPTASPMFTAHPVYDEPAPMSKSADPLPSAPWDAPSPNSIPPPPSKYNQRQQFFEQQHASLGSPYSSSGSSSDSLVGQTQNLSINSSSTTKQVKQEDALFKDLVDFAKAKSSSSSKPNRSF* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0201 514 PIRSF TOM1 1 514 IPR014645 -
Vvi18g0201 514 Gene3D - 3 141 IPR008942 -
Vvi18g0201 514 MobiDBLite consensus disorder prediction 423 437 - -
Vvi18g0201 514 SUPERFAMILY GAT-like domain 145 267 - -
Vvi18g0201 514 Pfam GAT domain 193 267 IPR004152 GO:0035091|GO:0043130
Vvi18g0201 514 Gene3D - 175 272 IPR038425 -
Vvi18g0201 514 SUPERFAMILY ENTH/VHS domain 7 142 IPR008942 -
Vvi18g0201 514 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Vvi18g0201 514 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Vvi18g0201 514 MobiDBLite consensus disorder prediction 361 397 - -
Vvi18g0201 514 MobiDBLite consensus disorder prediction 438 487 - -
Vvi18g0201 514 CDD GAT_GGA-like_plant 186 264 - -
Vvi18g0201 514 MobiDBLite consensus disorder prediction 301 487 - -
Vvi18g0201 514 PANTHER TOM1-LIKE PROTEIN 1 510 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vvi18g0201 514 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Vvi18g0201 514 CDD VHS 5 133 - -
Vvi18g0201 514 FunFam TOM1-like protein 2 4 151 - -
Vvi18g0201 514 Pfam VHS domain 6 123 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0201 Vvi-Chr18 1792259 1802516 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0201 - - vvi:100260765 885.174