Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0191 ATGTCTCTGTCTGCACAAGCTCTCGCTCTACTCGACAGTGTTCAGCATACCATTTTCAATTGCCTAAATTCAACCACGGCTTCTCTTTCACAGACACGTCAAGCTCATGCCCACATCCTCAAGACCGGACTCTTCAACGATACCCATCTCGCCACCAAGCTTCTATCGCATTATGCTAATAACATGTGCTTTGCGGATGCAACTCTTGTTCTTGATTTGGTTCCTGAGCCCAATGTCTTCTCTTTCTCCACCCTTATTTATGCATTCTCAAAGTTTCATCAATTCCATCACGCACTTTCTACTTTTTCTCAGATGCTCACCCGAGGCCTCATGCCTGACAATCGTGTCCTCCCTAGTGCTGTCAAGGCCTGTGCTGGACTATCCGCCCTTAAGCCTGCCCGACAGGTTCATGGCATTGCATCTGTATCTGGGTTTGATTCAGATTCTTTTGTTCAATCTTCTTTGGTCCACATGTATATTAAATGCAACCAGATAAGAGATGCTCATAGAGTGTTTGATAGAATGTTCGAACCAGATGTGGTTAGTTGGAGTGCTTTGGTTGCGGCTTATGCTCGGCAGGGATGTGTAGATGAGGCAAAAAGGCTTTTCAGTGAGATGGGTGACTCGGGTGTGCAGCCCAATTTAATATCATGGAATGGTATGATCGCGGGGTTCAATCATAGCGGACTATATTCGGAGGCTGTTCTAATGTTTCTGGATATGCATTTAAGAGGTTTTGAACCTGATGGGACTACTATTTCTAGTGTTCTTCCGGCTGTAGGAGACTTGGAGGATCTGGTTATGGGGATACTAATTCATGGTTATGTGATAAAGCAAGGTCTTGTGTCAGATAAATGCGTCAGTAGCGCACTTATTGATATGTACGGGAAGTGTTCCTGCACATCCGAGATGTCACAAGTGTTTGATCAAATGGATCACATGGATGTAGGATCTTGCAATGCTTTCATTTTTGGATTATCCCGGAATGGGCAAGTCGAGAGTTCATTGAGGTTATTCAGGCAACTGAAGGACCAAGGGATGGAACTGAATGTGGTATCTTGGACATCAATGATTGCTTGTTGCTCCCAAAATGGGAGGGATATTGAAGCTCTGGAGCTTTTTAGAGAGATGCAGATTGCAGGGGTGAAACCAAATTCTGTAACAATCCCTTGCTTACTACCAGCTTGTGGCAATATTGCAGCATTAATGCATGGCAAGGCAGCCCATTGCTTCTCCCTTAGAAGGGGGATCTCCACTGATGTTTATGTGGGTAGTGCCTTAATTGATATGTATGCAAAGTGTGGAAGGATACAAGCATCCCGGATATGTTTTGATGGAATTCCCACCAAGAACTTGGTTTGTTGGAATGCAGTTATAGCTGGATATGCAATGCATGGCAAGGCAAAAGAGGCCATGGAGATTTTCGATTTGATGCAGAGAAGTGGACAGAAACCCGACATTATCAGCTTCACTTGTGTATTGTCTGCATGTAGCCAGAGTGGCCTAACAGAAGAAGGATCTTATTATTTTAATAGCATGTCTAGCAAGTATGGGATTGAAGCTAGAGTGGAGCATTATGCTTGCATGGTTACTCTTCTTAGTCGTGCAGGAAAGCTTGAGCAGGCTTATGCCATGATCAGAAGAATGCCAGTCAATCCAGATGCTTGTGTTTGGGGAGCTTTGCTCAGTTCCTGTAGAGTTCACAATAACGTGAGTCTGGGTGAGGTTGCTGCTGAGAAACTCTTTGAGCTAGAACCAAGCAATCCTGGAAACTATATTCTTCTATCTAATATTTATGCATCTAAGGGTATGTGGAATGAAGTGAATAGGGTAAGGGATATGATGAAGAATAAGGGTTTGAGGAAAAACCCTGGTTGCAGTTGGATTGAGGTGAAAAACAAAGTGCACATGCTTTTAGCAGGAGACAAATCGCATCCTCAAATGACCCAAATTATTGAAAAGTTGGATAAATTGAGCATGGAGATGAAGAAATTGGGTTATTTTCCAGAAATCAATTTTGTGCTGCAAGATGTAGAGGAACAGGACAAGGAGCAGATCTTGTGTGGGCACAGTGAGAAGTTGGCGGTGGTGTTCGGGCTTCTGAACACTCCCCCAGGATATCCACTTCAAGTAATTAAGAACCTCAGAATTTGTGGGGACTGCCATGTTGTTATAAAATTTATATCTAGCTTTGAAAGGAGGGAGATTTTTGTTAGAGATACAAACCGCTTTCATCACTTTAAAGAGGGAGCTTGTTCTTGTGGTGATTATTGGTGA 2277 0.433 MSLSAQALALLDSVQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0191 758 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Vvi18g0191 758 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 213 695 IPR046960 GO:0003723|GO:0009451
Vvi18g0191 758 Pfam PPR repeat 318 346 IPR002885 -
Vvi18g0191 758 Pfam PPR repeat 80 110 IPR002885 -
Vvi18g0191 758 Pfam PPR repeat 289 313 IPR002885 -
Vvi18g0191 758 Pfam PPR repeat 526 550 IPR002885 -
Vvi18g0191 758 Pfam PPR repeat 153 176 IPR002885 -
Vvi18g0191 758 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Vvi18g0191 758 Pfam E+ motif 635 662 IPR046849 -
Vvi18g0191 758 FunFam pentatricopeptide repeat-containing protein At1g20230 isoform X2 271 403 - -
Vvi18g0191 758 Gene3D Tetratricopeptide repeat domain 139 268 IPR011990 GO:0005515
Vvi18g0191 758 Gene3D Tetratricopeptide repeat domain 276 412 IPR011990 GO:0005515
Vvi18g0191 758 NCBIfam pentatricopeptide repeat 216 249 IPR002885 -
Vvi18g0191 758 NCBIfam pentatricopeptide repeat 453 487 IPR002885 -
Vvi18g0191 758 NCBIfam pentatricopeptide repeat 80 113 IPR002885 -
Vvi18g0191 758 NCBIfam pentatricopeptide repeat 181 214 IPR002885 -
Vvi18g0191 758 NCBIfam pentatricopeptide repeat 488 519 IPR002885 -
Vvi18g0191 758 NCBIfam pentatricopeptide repeat 318 351 IPR002885 -
Vvi18g0191 758 NCBIfam pentatricopeptide repeat 352 385 IPR002885 -
Vvi18g0191 758 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Vvi18g0191 758 FunFam Pentatricopeptide repeat-containing protein At1g20230 146 269 - -
Vvi18g0191 758 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Vvi18g0191 758 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Vvi18g0191 758 FunFam Pentatricopeptide repeat-containing protein mitochondrial 404 514 - -
Vvi18g0191 758 Pfam E motif 568 630 IPR046848 -
Vvi18g0191 758 Gene3D Tetratricopeptide repeat domain 4 138 IPR011990 GO:0005515
Vvi18g0191 758 Gene3D Tetratricopeptide repeat domain 451 650 IPR011990 GO:0005515
Vvi18g0191 758 Pfam DYW family of nucleic acid deaminases 666 758 IPR032867 GO:0008270
Vvi18g0191 758 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Vvi18g0191 758 Pfam PPR repeat family 450 497 IPR002885 -
Vvi18g0191 758 Pfam PPR repeat family 350 396 IPR002885 -
Vvi18g0191 758 Pfam PPR repeat family 178 225 IPR002885 -
Vvi18g0191 758 FunFam Pentatricopeptide (PPR) repeat-containing protein 515 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0191 Vvi-Chr18 1730331 1732607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0191 33 758 Glycoside Hydrolase AT3G49170 35.598 5.73e-147 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0191 - - vvi:100248977 1531.15