Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0184 ATGATCTTCTCACTTAACTCCGCTTCTTTTTTCTCTATTTCCCACACTTCACAGTCTGCACTTCTCTTCCCTCGAAACCCTAAATCGTGCTCTAGGGTTTTCAGAATCCTTAGAGCTTGCTCTAATTCCACCGACGAACCTCTCGTATCTGTTTCCGGCCGGAGAACTAATTACGCAGGAGTTCGATTGGAGGAGACCGTTGTCGATGTCAATTCCGATTCAGGAAAGCTGAGGCTGGATTCTTGGATTTCTTCTCGCATAATCGGTATAAGTAGGGCTAGAGTGCAATCGAGCATTCGGTCGGGGCTTGTAAGCGTTAATGACAGGATTGTCGATAAGGTTTCCCATGTTATCAGAGCTGGGGACAAGGTTAATTGCACAATATCGGAGTTGCAACCCTTAAGGGCTGAACCAGAGGATATACCTTTAGATATAGTTTATGAAGATGAACATGTACTGGTGGTCAACAAACCTGCACACATGGTTGTTCATCCTGCACCTGGCAATGCTAGTGGCACACTTGTAAATGGTATTCTTCACCATTGCAGTCTTCCCACAGTTGCATTGCCAAACAGGGACTCTGAGGAAGATGATATTTCGGATGATGAGTTCAATAGTTTTGCTGCAGGCCAGAATTGTGGCACATGTGAAACTAATATTCGCCCTGGAATTGTGCACAGATTAGACAAAGGCACCAGTGGATTGCTTGTTGTTGCGAAGGATGAACATTCTCATGCCCATTTATCTGAACAGTTCAAGCTACACTCCATCCACAGAGTATACATTAGTCTTACGTCTGGAGTACCCACTCCACTTTCTGGACGAGTGGAGATCCCAGTAGGTCGTGATCCAAATAATCGAATTCGCATGACTGCTGTTCCTGGACCTAGTAACTCTGGACAGGCCCGTCATGCTGCTAGTAGGTATAAAGTTATTGAAATACTTGCTGCTGGTGGTTCTGCATTGGTTGAGTGGAGATTAGAAACTGGGCGTACTCATCAGATAACCCTGTGGGTGTGCTTGAAGATGTGA 1032 0.4535 MIFSLNSASFFSISHTSQSALLFPRNPKSCSRVFRILRACSNSTDEPLVSVSGRRTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVALPNRDSEEDDISDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQITLWVCLKM* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0184 343 SUPERFAMILY Alpha-L RNA-binding motif 77 130 - -
Vvi18g0184 343 ProSitePatterns Rlu family of pseudouridine synthase signature. 225 239 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi18g0184 343 CDD PseudoU_synth_RluA_like 152 335 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi18g0184 343 CDD S4 78 156 - -
Vvi18g0184 343 ProSiteProfiles S4 RNA-binding domain profile. 77 150 - -
Vvi18g0184 343 Gene3D - 62 132 IPR036986 GO:0003723
Vvi18g0184 343 Pfam RNA pseudouridylate synthase 151 335 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi18g0184 343 Gene3D Pseudouridine synthase 134 338 - -
Vvi18g0184 343 SMART s4_6 77 142 IPR002942 GO:0003723
Vvi18g0184 343 SUPERFAMILY Pseudouridine synthase 137 335 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi18g0184 343 Pfam S4 domain 78 124 IPR002942 GO:0003723
Vvi18g0184 343 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 81 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0184 Vvi-Chr18 1678951 1683511 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0184 K06180 - vvi:100852977 652.129