Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0180 ATGGCGTTGGTCAAGTCAAAGGTGCGTTTGTCTCTTTTACGATATAGTCTCTCTCCTGTTTCTCAGCATAGCTTTAGACTCTATTCTTCTTCTTCGGAAGCCTCCGAAGAAGAAGATGAAGTAAAGGAGAGTGGTAACAGTGCTGTTAATATCGTATTATCTTCTGAAGAAACCCTAGTTGTGGAAAAGTTTCATTCTCTGATCAAAAGCCACCAACGAAAAAACACTAACCCTGATCCTATCTCTCCAAATCCTCACTATACTATTGCTAGTCTGAGTTTCGATTTTTCCCAAATCTCCTCCGCGGATTCTGTCTCCTCCGCCATCGTCCGCCGCGTGATTGAGAAATGTGGTGGTGTCCGCCACGGCATTCCCTTTCCCCAAACACTAGCGTTCTTCAACTGGGCGACGAACCTTGAAGAGTTTGGGCACTCTCCCGAACCCTACATGGAGATGATTGATCTAGCCGGGAAGGTACGGCAATTCGATTTGGCGTGGCAGTTGATTGATTTGATGAAAACGCGAAACGTAGAAATCCCGGTTGAGACGTTCACCATCCTTGTTCGGCGGTATGTGAAGGCTGGATTGGCTGCAGAAGCGGTCCATGCGTTTAATCGTATGGAGGACTATGGCTGCAAACCTGATAAGATTGCATTTTCTGTTGTGATTAGTAGTCTATCTAAGAAGAGAAGGGCAATTGAGGCTCAGTCCTTTTTTGATAGTTTGAAGGATAGATTCGAGCCTGATGTGGTTGTGTACACTAGCTTGGTTCATGGGTGGTGCCGAGCAGGCAACATTTCAGAAGCAGAGAGGGTTTTTGGGGAAATGAAGATGGCTGGAATTCAGCCCAATGTGTATACTTACAGTATTGTGATTGATGCATTGTGTAGAAGTGGACAAATTACGCGTGCCCATGATGTTTTTTCAGAGATGATTGATGTAGGGTGTGATCCAAATGCTATCACTTTCAACAACCTAATGCGGGTTCATGTCAAGGCAGGTCGAACGGAGAAGGTTTTACAAGTTTATAATCAGATGAAGAGGCTTGGATGCCCTCCTGATGCCATCACATACAATTTTCTCATCGAGAGTCATTGCAGAGATGACAATCTTGAAGAAGCTGTTAAGATTCTTAATTCAGTTAAGAAAGGGTGTAACCTAAATGCATCATCTTTCAATCCGATCTTTGGATGCATTTCAAAGTTGGGGGATGTCAATAGTGCCCACCGCATGTTTGCTAAGATGAAGGATTTGAAATGTAGACCCAATACAGTGACATACAATATATTGATGCGGATGTTTGCTGACAAAAAATCAACCGACATGGTTCTCAAGCTCAGGAAAGAAATGGATGAAAATGAAATTGAGCCTAATGCGAATACTTACCGGGTCCTAATTTCAACTTTCTGTGGAATTGGGCATTGGAACAATGCATACTCGTTCTTTAAGGAGATGATTGAGGAGAAATGCTTGAGACCAAGTCTGCCAGTTTATGAGATGGTGCTTCAGCAGCTGAGGAAGGCAGGGCAGCTAAAGAAGCATGAGGAATTGGTGGAGAAGATGGTGAATAGGGGATTTGTTACTCGGCCTCTATAG 1596 0.4373 MALVKSKVRLSLLRYSLSPVSQHSFRLYSSSSEASEEEDEVKESGNSAVNIVLSSEETLVVEKFHSLIKSHQRKNTNPDPISPNPHYTIASLSFDFSQISSADSVSSAIVRRVIEKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRGFVTRPL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0180 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Vvi18g0180 531 PANTHER OS03G0856100 PROTEIN 84 380 - -
Vvi18g0180 531 SUPERFAMILY TPR-like 294 484 IPR011990 GO:0005515
Vvi18g0180 531 Gene3D Tetratricopeptide repeat domain 382 529 IPR011990 GO:0005515
Vvi18g0180 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Vvi18g0180 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Vvi18g0180 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Vvi18g0180 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 384 IPR002885 -
Vvi18g0180 531 Gene3D Tetratricopeptide repeat domain 97 234 IPR011990 GO:0005515
Vvi18g0180 531 NCBIfam pentatricopeptide repeat 461 491 IPR002885 -
Vvi18g0180 531 NCBIfam pentatricopeptide repeat 425 459 IPR002885 -
Vvi18g0180 531 NCBIfam pentatricopeptide repeat 321 355 IPR002885 -
Vvi18g0180 531 NCBIfam pentatricopeptide repeat 286 320 IPR002885 -
Vvi18g0180 531 NCBIfam pentatricopeptide repeat 356 382 IPR002885 -
Vvi18g0180 531 NCBIfam pentatricopeptide repeat 391 424 IPR002885 -
Vvi18g0180 531 NCBIfam pentatricopeptide repeat 183 215 IPR002885 -
Vvi18g0180 531 NCBIfam pentatricopeptide repeat 251 285 IPR002885 -
Vvi18g0180 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Vvi18g0180 531 Gene3D Tetratricopeptide repeat domain 240 313 IPR011990 GO:0005515
Vvi18g0180 531 Gene3D Tetratricopeptide repeat domain 314 381 IPR011990 GO:0005515
Vvi18g0180 531 Pfam PPR repeat 391 420 IPR002885 -
Vvi18g0180 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Vvi18g0180 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Vvi18g0180 531 Pfam PPR repeat family 318 367 IPR002885 -
Vvi18g0180 531 Pfam PPR repeat family 422 470 IPR002885 -
Vvi18g0180 531 Pfam PPR repeat family 182 228 IPR002885 -
Vvi18g0180 531 Pfam PPR repeat family 248 297 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0180 Vvi-Chr18 1619217 1620812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0180 142 525 Miscellaneous Gene Families AT4G11690 26.509 8.80e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0180 - - vvi:100267650 1034.25