Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0171 ATGGCCATCGTCACCTCCGCCGCAGTCGCCATCCCCTCATTCACCGGCCTCAAGGCCTCCGGCGCAACCATGACCCGCGCTGCCGCCACCGTCAAGACCATCACCGCACCGGCCCCGAGGCTCGTGGCCAAGGCTGCACTGAAGGACGTGGGAGTGGCCGTCGTCGCCACCGCCGCCAGCGCTTTGCTCGCCAGCAATGCCATGGCCATGGAGGTCTTGCTCGGCAGCAGCGACGGAGGCCTGGTGTTTGTGCCGTCGACCATCACCGTCCCCGCCGGAGAGAAGATCACGTTCAAGAACAATGCTGGCTTCCCTCACAACGTTGTGTTCGACGAGGATGAAGTTCCGTCCGGCGTCGACGTATCGAAAATCTCGATGTCCGAAGAGGATCTGTTGAATGCACCTGGAGAAGTGTACTCTGTGACTTTGACCGAGAAAGGTACCTACAGTTTCTACTGTTCTCCTCACCAGGGTGCTGGTATGGTGGGAAAGGTGACCGTTAATTAA 507 0.5976 MAIVTSAAVAIPSFTGLKASGATMTRAAATVKTITAPAPRLVAKAALKDVGVAVVATAASALLASNAMAMEVLLGSSDGGLVFVPSTITVPAGEKITFKNNAGFPHNVVFDEDEVPSGVDVSKISMSEEDLLNAPGEVYSVTLTEKGTYSFYCSPHQGAGMVGKVTVN* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0171 168 PRINTS Plastocyanin signature 75 94 IPR002387 GO:0005507|GO:0009055
Vvi18g0171 168 PRINTS Plastocyanin signature 98 116 IPR002387 GO:0005507|GO:0009055
Vvi18g0171 168 PRINTS Plastocyanin signature 147 166 IPR002387 GO:0005507|GO:0009055
Vvi18g0171 168 PRINTS Type I copper blue protein family signature 145 159 IPR001235 GO:0005507|GO:0009055
Vvi18g0171 168 PRINTS Type I copper blue protein family signature 104 119 IPR001235 GO:0005507|GO:0009055
Vvi18g0171 168 PRINTS Type I copper blue protein family signature 89 102 IPR001235 GO:0005507|GO:0009055
Vvi18g0171 168 CDD Plastocyanin 71 168 IPR002387 GO:0005507|GO:0009055
Vvi18g0171 168 ProSitePatterns Type-1 copper (blue) proteins signature. 147 161 IPR028871 -
Vvi18g0171 168 NCBIfam plastocyanin 71 168 IPR002387 GO:0005507|GO:0009055
Vvi18g0171 168 Gene3D - 70 168 IPR008972 -
Vvi18g0171 168 Pfam Copper binding proteins, plastocyanin/azurin family 71 168 IPR000923 GO:0005507|GO:0009055
Vvi18g0171 168 SUPERFAMILY Cupredoxins 67 168 IPR008972 -
Vvi18g0171 168 PANTHER PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED 39 168 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0171 K02638 - vvi:100248911 304.293