Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0169 ATGGGTTCCAACCACAAGAGTCTCCAGGCAATATTGGGCGCACCAGGAGTGAGGGGTAAGAGGGTAACGGCTCTATCAAAAGATGGATTAACTGATTTTGTGCTTTCCATGATCTCCAAGAAACAAGAGCTCAAAGAGCCATTTTATGTGCTTGATTTGGGTGTGGTGGTGAGTCTCATGGAGAAGTGGTCTCGGGCTCTGCCTCTGGTTCGACCCTTTTATGCTGTCAAGGCGGTGTTTGATACAGCCTCGCGGCTCGGCTTGCCTCGAATGCATGTGCTCAATATCGGTGGCGGCTTTACATCTGGGCCGCACTTCGATGACGCCACTTCTGCTATCAAATCGTCTCTCCAAGCCTACTTCCCTAACGAACATGGGTTAACCATCATAGGCGAGCCAGGCAGGTACTTCGCCGAATCGGCTTTCACTCTAGTCACCAATATTATTGGGAAGCGTGTGAGGTCGGAGCTGAGGGAGTACTGGATCAACGACCCTCTCGCTTGCACTTCCAATAGCGTGAACCCCACGTGCCGTCGAGTTAGGACTTACTCCTCTACAGTGTTTGGACCCACGTGCGACGCACTTGATACAGTTTTGACCGGTCACCAGTTGCCAGAACTGCAGGTCAATGATTGGCTGATGTTTCCTAGAATGGGAGCTTATACCGCTGCTGCCGGGTCCAACTTCAATGGGTTTAACATGTCCGCGGTTACGACCCACCTAGTCTACTCGAATCCAACCTGA 744 0.5148 MGSNHKSLQAILGAPGVRGKRVTALSKDGLTDFVLSMISKKQELKEPFYVLDLGVVVSLMEKWSRALPLVRPFYAVKAVFDTASRLGLPRMHVLNIGGGFTSGPHFDDATSAIKSSLQAYFPNEHGLTIIGEPGRYFAESAFTLVTNIIGKRVRSELREYWINDPLACTSNSVNPTCRRVRTYSSTVFGPTCDALDTVLTGHQLPELQVNDWLMFPRMGAYTAAAGSNFNGFNMSAVTTHLVYSNPT* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0169 247 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 219 232 IPR000183 GO:0003824
Vvi18g0169 247 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 129 148 IPR000183 GO:0003824
Vvi18g0169 247 SUPERFAMILY Alanine racemase C-terminal domain-like 118 238 IPR009006 GO:0003824
Vvi18g0169 247 Gene3D Alanine racemase 78 135 IPR029066 -
Vvi18g0169 247 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 39 78 IPR002433 GO:0006596
Vvi18g0169 247 SUPERFAMILY PLP-binding barrel 75 141 IPR029066 -
Vvi18g0169 247 FunFam Uncharacterized protein 78 137 - -
Vvi18g0169 247 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 136 245 IPR009006 GO:0003824
Vvi18g0169 247 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 84 101 IPR022657 -
Vvi18g0169 247 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 79 138 IPR022644 GO:0003824
Vvi18g0169 247 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 48 219 IPR022643 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0169 Vvi-Chr18 1522793 1524026 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0169 K01581 - vvi:100232922 341.658