Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0164 ATGGAATCGTCGGGTGGAGGGAAGAGAGAGGAGGAGGATGTCGGAAGCTACAACAGCAACAACGTGAAGAAAGCAAGGTTGCATTCAACGCTGACAGCTCTATTGGACGATCCTATACTTGCTGATGTCCCCAAGGAACCAACCTTATCGGATGTTGACACTCTCATCAACTTAGAATTGGGCAGCGCCATGCGGATCTCTGTTATCAAATTGGATTCTACATCCTTCGATGTTGCGGTGTTGAATTCGGCTACGGTAAAGGATTTGAAACTGGCAATCAAGAAAAAGATAAACGATATGGAGCAATCGAAAATGGGGCATCGCCACATTTCATGGAAGCACGTTTGGGCAAATTTTTGCCTTTCATACTATAATGATAAGTTGATTAATGATGGTTCTGCCCTTCAAGATTTTGGCATACACAATAATTCTCAGGTGCATTTTGTCCCCTTCATCATGTCAAAGGGTTCTCAGAGGCATTCTAGGAGGAGAAAACATCGATTCTTTCATGGTCTTAACAAACGTATATGA 531 0.4294 MESSGGGKREEEDVGSYNSNNVKKARLHSTLTALLDDPILADVPKEPTLSDVDTLINLELGSAMRISVIKLDSTSFDVAVLNSATVKDLKLAIKKKINDMEQSKMGHRHISWKHVWANFCLSYYNDKLINDGSALQDFGIHNNSQVHFVPFIMSKGSQRHSRRRKHRFFHGLNKRI* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0164 176 Pfam Ubiquitin-like domain 64 149 IPR040610 -
Vvi18g0164 176 Gene3D - 58 160 - -
Vvi18g0164 176 CDD Ubl_SNRNP25 63 149 IPR040610 -
Vvi18g0164 176 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 1 175 IPR039690 GO:0000398|GO:0005689
Vvi18g0164 176 SUPERFAMILY Ubiquitin-like 58 151 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0164 Vvi-Chr18 1457918 1459889 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0164 K13153 - vvi:109121397 339.732