Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0161 ATGATAGTGTCAGTTCCTTCTCGTTCATCACTTTCGTTACACTCTCTCTTCGTCCATTGTTTCATCAGTTTCAAAAAATTCGCGCACATACAGAAATACCCTTTTCTTCTGTGCAAATTCTTCATCAGCAAAAGAAGAATTTGCAATGCCAATCTCTTTCAACTCTCTCCCCCATTTCAGGTATATTCAATTGTTCAATCTCTCGTTTTCGCTATAAGCTCTTGCACGTCCGTATCCTATTGCTCCGCAATTCATGCTCGAGTGATCAAATCTTTGAATTACAGTGATGGTTTCATTGGTGACCGTTTGGTGTCAATGTATTTCAAATTGGGCTATGATGAGGATGCACAGAGGCTCTTTGATGAAATGCCTAACAAAGACTTGGTCTCCTGGAATTCGTTGATGTCGGGGCTTTCGGGAAGGGGGTATTTGGGTGCGTGCTTGAATGCGTTTTGTAGGATGAGAACAGAGAGTGGTAGGCAACCCAATGAGGTGACCCTTTTATCTGTAGTCTCAGCTTGTGCTGATATGGGAGCCCTAGATGAAGGGAAATCCCTTCATGGGGTTGTAGTCAAACTGGGGATGTCGGGGAAGGCTAAGGTAGTTAATTCTCTCATTAACATGTATGGGAAGTTAGGTTTTTTAGATGCGGCTAGTCAATTGTTTGAGGAAATGCCTGTGAGGAGTTTAGTGTCCTGGAATTCAATGGTTGTGATTCATAATCATAATGGGTATGCGGAGAAAGGGATGGATTTGTTTAATTTGATGAAAAGGGCTGGTATCAATCCCGATCAAGCCACTATGGTTGCCTTGCTTCGGGCTTGCACAGATACAGGTCTAGGAAGACAAGCAGAGTCCATTCATGCGTATATCCATAGATGTGGTTTTAATGCGGATATCATCATTGCAACTGCACTTCTAAATTTGTATGCAAAGTTGGGGAGGTTAAATGCTTCAGAGGACATTTTTGAAGAGATAAAAGATCGGGACAGAATAGCTTGGACTGCCATGCTTGCAGGCTATGCTGTGCATGCATGTGGCAGAGAAGCAATTAAGCTCTTTGATCTCATGGTCAAGGAAGGTGTGGAGGTTGATCATGTAACATTCACTCATTTGTTAAGTGCTTGCAGCCATTCAGGGCTTGTTGAGGAGGGGAAGAAATATTTTGAGATTATGTCTGAAGTTTACAGGGTTGAGCCTCGGTTAGATCACTATTCATGCATGGTTGACCTTCTAGGTCGCTCAGGACGTTTGGAAGATGCTTATGAGCTGATTAAGAGCATGCCAATGGAGCCTAGTTCTGGTGTATGGGGTGCTCTTCTTGGTGCTTGTAGGGTATATGGTAATGTTGAACTTGGTAAGGAAGTTGCGGAGCAATTGTTATCTCTAGACCCATCAGACCATAGAAACTATATTATGTTATCAAATATATACTCTGCGGCTGGTCTATGGAGAGATGCTTCTAAGGTGAGAGCTTTAATGAAGGAGAGGAGGCTTACAAGAAATCCTGGATGCAGTTTTATTGAGCATGGGAACAAGATCCATCGCTTTGTAGTTGGTGATCAATTACACCCCAGGTCAGACGAGATACATACCAAGCTGGAAGAACTTATCAGGAAAATTCGGGAGGCTGGATGTGCACCTAAAACAGAGTTCGTTCTACATGACATTGATGAGGAGGTCAAAGTGGATATGATCAATAAGCACAGTGAGAAATTGGCGATTGCATTTGGTCTTTTGGTGACTGGTTCTGGTGTGCCACTAATTATAACTAAGAATCTTAGAATCTGTGGTGACTGTCACAGCACTGCAAAGTTTGCATCATTGCTTGAGAAGCGTACCATCATTATTCGTGATTCAAAGCGGTTTCACCATTTTGCTGATGGATTATGTTCATGTAGGGATTATTGGTGA 1914 0.4253 MIVSVPSRSSLSLHSLFVHCFISFKKFAHIQKYPFLLCKFFISKRRICNANLFQLSPPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0161 637 Pfam E+ motif 514 541 IPR046849 -
Vvi18g0161 637 Gene3D Tetratricopeptide repeat domain 193 287 IPR011990 GO:0005515
Vvi18g0161 637 Pfam DYW family of nucleic acid deaminases 545 637 IPR032867 GO:0008270
Vvi18g0161 637 FunFam Pentatricopeptide repeat-containing protein At5g40410, mitochondrial 55 183 - -
Vvi18g0161 637 Pfam PPR repeat 103 126 IPR002885 -
Vvi18g0161 637 Pfam PPR repeat 404 429 IPR002885 -
Vvi18g0161 637 Pfam PPR repeat 203 227 IPR002885 -
Vvi18g0161 637 Pfam PPR repeat 304 329 IPR002885 -
Vvi18g0161 637 Pfam PPR repeat 129 156 IPR002885 -
Vvi18g0161 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Vvi18g0161 637 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 68 574 IPR046960 GO:0003723|GO:0009451
Vvi18g0161 637 FunFam Pentatricopeptide repeat-containing protein At5g40410, mitochondrial 186 282 - -
Vvi18g0161 637 Gene3D Tetratricopeptide repeat domain 334 537 IPR011990 GO:0005515
Vvi18g0161 637 Gene3D Tetratricopeptide repeat domain 55 192 IPR011990 GO:0005515
Vvi18g0161 637 SUPERFAMILY TPR-like 280 490 IPR011990 GO:0005515
Vvi18g0161 637 NCBIfam pentatricopeptide repeat 405 428 IPR002885 -
Vvi18g0161 637 NCBIfam pentatricopeptide repeat 333 365 IPR002885 -
Vvi18g0161 637 NCBIfam pentatricopeptide repeat 202 229 IPR002885 -
Vvi18g0161 637 NCBIfam pentatricopeptide repeat 231 264 IPR002885 -
Vvi18g0161 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vvi18g0161 637 FunFam Putative pentatricopeptide repeat-containing protein 300 563 - -
Vvi18g0161 637 Pfam PPR repeat family 230 275 IPR002885 -
Vvi18g0161 637 Pfam PPR repeat family 330 377 IPR002885 -
Vvi18g0161 637 Pfam E motif 447 509 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0161 Vvi-Chr18 1449246 1451159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0161 65 637 Glycoside Hydrolase AT3G49170 37.158 2.77e-139 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0161 - - vvi:100260830 1266.14