Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0157 ATGGAAATCCAGGAGCCGGACCCCAAAAGACCAAAAATGTCCCAAACCACCACCACCTCCGATGACGAAGACTGTGACACCACCACCGCCACCAAAAAGCCGAGATACAAGCGCCGCAAGATCGCCATCTTCTTCGCATACTGTGGCGTGGGCTACCAAGGCATGCAGAAGAACCCCGGAGCCAAAACCATCGAAGGGGACCTCGAAGAAGCCCTCTTCTTCTCGGGCGCCGTCCCCGAGCAAGACCGCGGACACCCCAAGCGGTTCGACTGGGCTCGGTCCGCTCGAACCGATAAGGGCGTCAGCGCAGTGGGTCAAGTAGTCTCAGGCCGGTTCTACATTGATCCACCCGGCCTAGTCGAGCGCCTGAATTCGAATCTCCCTCCCCAGATTCGGATCTTTGGGTTTAAGCGCGTGACGGCGTCGTTTAATGCCAAGAAATTCTGTGATCGCAGGAGGTATGTGTATCTTATTCCAGTGTTTGCTCTTGATCCCAGTTCGCATCCTGATAGAGAGAGTGTCTTGGCTAGTGTGGGGTCTGAAAATGAGCTTGTTAAGTGCTTGGAGTGTTCTGAGAGAGGTCGTAAAGTCGTAGGTATAATGGGTAAACGCAAAGGTGAATCTAAAAACATTGTTCAGTTGGGCATTCCATCGAACGATGAAGCTGCAATCGTGAACTCTGAAGTTCAAGAAGAGATTAAGGCCACTTCAAACAACAATAACATAGATGCTAATAATTCAATTTCTGAAACGATAAAGGAAGAAGCCGCAAAACTGAGCTCTGAAGTTGATGCAGAGATTATCAATGGTGAAAATTCAATTTCTGAACCCGGAGAGAATAAGCTTGAGAAGGGAAGTGGGTTTTGTTATGGCGACAAGGAGAGGGAGAGATTCAATAGAATTCTGGGTCATTATGTTGGAACTCATAACTTCCACAACTTCACCACCAGAATTAAAGCCGAGGATCCCTCTGCCCAACGCTTCATTGTTTCATTTGATGGCAACACCATCGTCACTGTAGAAGGCATCGAATTTGTGAAGTGTGAAGTTGTGGGGCAGAGCTTCATGCTTCATCAGATTCGGAAGATGATTGGTCTTGCAGTAGCAATCATGAGAAACGTTGCCCCTGAGTCCTTGCTAGAAACAGCTCTACTAAAGGATGTTAACATCAATGTGCCCACGGCCCCTGAAGTTGGCTTATACCTGGACGAGTGTTTCTTCTCGTCCTACAACAAGAAATGGAGAGACAGCCATGAAGAGGTATCCATGAAAGCCTATGCAGAAGAGGCAGAAGAGTTCAAGATGAAGCATGTCTACTCCCATATCGCAGCAACAGAACATAAGGAAGGAGTTGTGGCCCTCTGGCTGCATTCTCTGAACCACCGCAACTACCCCGATTTATGCATTGGGGACAATGGAGCTGCCTCTGATGGGAAAAATGGTGAAGAGGAAACAATGGCCGACTGA 1467 0.4847 MEIQEPDPKRPKMSQTTTTSDDEDCDTTTATKKPRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFYIDPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIPVFALDPSSHPDRESVLASVGSENELVKCLECSERGRKVVGIMGKRKGESKNIVQLGIPSNDEAAIVNSEVQEEIKATSNNNNIDANNSISETIKEEAAKLSSEVDAEIINGENSISEPGENKLEKGSGFCYGDKERERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAPEVGLYLDECFFSSYNKKWRDSHEEVSMKAYAEEAEEFKMKHVYSHIAATEHKEGVVALWLHSLNHRNYPDLCIGDNGAASDGKNGEEETMAD* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0157 488 FunFam tRNA pseudouridine synthase 30 149 - -
Vvi18g0157 488 Gene3D - 29 149 IPR020094 GO:0003723|GO:0009982
Vvi18g0157 488 MobiDBLite consensus disorder prediction 1 31 - -
Vvi18g0157 488 FunFam tRNA pseudouridine synthase 150 468 - -
Vvi18g0157 488 Pfam tRNA pseudouridine synthase 304 407 IPR020097 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi18g0157 488 MobiDBLite consensus disorder prediction 10 24 - -
Vvi18g0157 488 SUPERFAMILY Pseudouridine synthase 37 417 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi18g0157 488 CDD PseudoU_synth_PUS1_PUS2 43 407 IPR041708 GO:0009982|GO:0031119
Vvi18g0157 488 Gene3D - 268 469 IPR020095 GO:0003723|GO:0009982
Vvi18g0157 488 PANTHER PSEUDOURIDYLATE SYNTHASE 28 462 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0157 K06173 - qsu:112017134 717.613