Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0156 ATGACTCTACCTTCAAATCGCTCATTCTTTACAGCACTTCTGCAATACACCCACAACAGAAGTCTCCAAAAGGGCAAGGCCCTCCACGCCCAAATCATCAAATCCAGTTCTTCCTGCGTTTACATCGCTAACAGCCTTGTCAACTTGTACGCCAAGTGCCAACGCTTACGCGAAGCCAAGTTTGTTTTCGAGCGTATACAAAACAAGGACGTCGTCTCATGGAACTGCATCATCAATGGCTACTCTCAACATGGCCCCAGTGGCTCTTCCCATGTCATGGAACTCTTCCAGCGGATGAGGGCCGAGAACACTGCCCCGAATGCCCATACTTTTGCTGGCGTTTTCACCGCCGCCTCCACCTTGGTGGACGCAGCCGGTGGCAGACTAGCTCACGCGGTGGCAATAAAAATGGATAGTTGTCGTGACGTATTTGTGGGTAGTTCTTTGATGAATATGTATTGTAAGGCTGGTCTTACCCCGGAGGCTCGCAAGGTGTTTGATACAATGCCGGAGAGGAATTCGGTTTCTTGGGCGACGATGATTTCTGGGTATGCATCACAGAAGCTTGCTGCTGAAGCATTGGGGCTGTTTAGGTTGATGAGGAGGGAAGAGGAGGGCGAGAATGAGTTTGTGTTCACTAGCGTTCTTAGTGCATTGACGCTGCCTGAGTTGGTCAATAATGGTAAGCAAATTCATTGTATTGCGGTTAAAAATGGGCTGTTGTCGATTGTGTCCGTTGGGAATGCTCTCGTTACAATGTATGCAAAATGTGGGAGTTTGGATGATGCACTTCAAACGTTCGAGACGTCAAGTGATAAGAATTCTATTACATGGTCAGCGATGATCACTGGTTATGCACAATCTGGGGATTCTGACAAGGCCTTGAAGCTGTTTTCAAGTATGCATCTTTCGGGAATTAGGCCTAGTGAGTTCACATTCGTTGGGGTTATTAATGCTTGCAGTGATCTTGGTGCTGCTTGGGAAGGAAAGCAAGTGCATGATTATTTGCTGAAGCTTGGATTTGAATCCCAAATATATGTAATGACAGCTCTTGTTGATATGTACGCGAAATGCAGCAGCATAGTTGATGCTAGGAAGGGTTTTGATTATTTGCAAGAGCCTGATATTGTTTTGTGGACTTCCATGATTGGAGGGTATGTACAAAATGGTGAGAATGAAGACGCTCTGAGTTTATATGGTAGAATGGAGATGGAGGGTATTTTGCCCAATGAGCTAACTATGGCTAGTGTTCTAAAAGCCTGTTCAAGCCTTGCTGCCTTGGAACAAGGAAAGCAAATTCATGCCCGTACTGTTAAGTATGGATTTGGTCTAGAAGTTCCAATTGGAAGTGCTCTTTCGACCATGTATGCCAAGTGTGGGTGTCTCAAAGATGGCACGCTTGTCTTTAGGAGGATGCCTGCAAGGGATGTAATATCATGGAATGCAATGATATCTGGGCTCTCCCAAAATGGATGTGGTAAGGAAGCTCTAGAACTCTTCGAGGAGATGCAATTAGAGGGCACAAAGCCAGACTATGTTACCTTTGTTAACATTCTCTCTGCGTGTAGCCACATGGGATTGGTGGAAAGAGGATGGGGTTATTTCAGGATGATGTTTGATGAATTTGGTATGGACCCCAGAGTAGAGCACTATGCTTGCATGGTTGATATTCTGAGCCGTGCAGGAAAGCTCAAAGAAGCAATAGAGTTCACTGAATCGGCTACCATTGATCATGGAATGTGTTTGTGGCGTATTATATTAGGTGCTTGTCGGAACTACCGTAATTATGAGTTGGGAGCCTATGCAGGGGAGAAACTGATGGAGTTGGGCTCCCAAGAGTCATCTGCTTATGTGTTGCTGTCTAGTATCTATTCTGCCTTGGGCAGGTGGGAAGATGTGGAAAGGGTCAGGAGGATGATGAAACTCCGGGGAGTGAGTAAGGAGCCTGGTTGTAGCTGGATTGAGCTCAAGAGTGGGGTTCATGTTTTTGTTGTCAAAGACCAGATGCATCCACAGATTGGAGATATACATGTTGAGCTACGACAGTTAAGCAAACAAATGAAGGATGAAGGTTATGAACCTGCCACTGATTCATTTTCTGCTGCTTTATGA 2112 0.4564 MTLPSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQLSKQMKDEGYEPATDSFSAAL* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0156 703 FunFam Pentatricopeptide repeat-containing protein At4g33170 327 439 - -
Vvi18g0156 703 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 231 326 - -
Vvi18g0156 703 Gene3D Tetratricopeptide repeat domain 121 230 IPR011990 GO:0005515
Vvi18g0156 703 Gene3D Tetratricopeptide repeat domain 231 326 IPR011990 GO:0005515
Vvi18g0156 703 Gene3D Tetratricopeptide repeat domain 3 120 IPR011990 GO:0005515
Vvi18g0156 703 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 123 225 - -
Vvi18g0156 703 NCBIfam pentatricopeptide repeat 377 411 IPR002885 -
Vvi18g0156 703 NCBIfam pentatricopeptide repeat 175 203 IPR002885 -
Vvi18g0156 703 NCBIfam pentatricopeptide repeat 148 173 IPR002885 -
Vvi18g0156 703 NCBIfam pentatricopeptide repeat 276 310 IPR002885 -
Vvi18g0156 703 NCBIfam pentatricopeptide repeat 478 511 IPR002885 -
Vvi18g0156 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Vvi18g0156 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Vvi18g0156 703 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 125 698 IPR046960 GO:0003723|GO:0009451
Vvi18g0156 703 Pfam PPR repeat family 69 117 IPR002885 -
Vvi18g0156 703 Pfam PPR repeat family 475 523 IPR002885 -
Vvi18g0156 703 Pfam PPR repeat family 374 422 IPR002885 -
Vvi18g0156 703 Pfam PPR repeat family 273 320 IPR002885 -
Vvi18g0156 703 Pfam E motif 593 655 IPR046848 -
Vvi18g0156 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 106 IPR002885 -
Vvi18g0156 703 FunFam Pentatricopeptide repeat-containing protein At2g33680 3 122 - -
Vvi18g0156 703 Gene3D Tetratricopeptide repeat domain 450 672 IPR011990 GO:0005515
Vvi18g0156 703 Gene3D Tetratricopeptide repeat domain 327 441 IPR011990 GO:0005515
Vvi18g0156 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Vvi18g0156 703 FunFam pentatricopeptide repeat-containing protein At2g33680 449 675 - -
Vvi18g0156 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Vvi18g0156 703 Pfam PPR repeat 248 268 IPR002885 -
Vvi18g0156 703 Pfam PPR repeat 147 173 IPR002885 -
Vvi18g0156 703 Pfam PPR repeat 175 203 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0156 Vvi-Chr18 1431364 1433475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0156 4 697 Glycoside Hydrolase AT3G49170 36.441 1.45e-144 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0156 - - vvi:100262605 1405.96