Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0155 ATGGGTTACATGAATAACGGTTTTGATGAAAGTCAGCAGAGTGATTATGGTGCAGTGCTACGCAATGGAAGAGAAATACTTTTGCAGGGATTCAACTGGGAGTCCCATAAACATGATTGGTGGAGAAATTTAGAAAAGAAGGTTCCTGATGTTGCAAAATCTGGGTTTACATCAGTATGGTTGCCACCAGCATCTCAGTCTTTCTCACCAGAAGGTTACCTTCCTCAGAACCTTTATTCCCTTAATTCTTCATATGGTTCTGAGCACCTATTAAAAAATCTACTTCAAAAATTGAACCAGCACAAAGTTAGAGCAATGGCTGACATAGTTATCAATCATCGTGTTGGTACTACCCAAGGACATGGTGGAATGTACAACCGTTATGATGGAATACCATTATCATGGAATGAACATGCTGTTACATCTTGTACTGGGGGACTGGGTAATCGAAGCAGTGGCGCCAACTTCCATGGGGTTCCAAATATTGATCATACCCAAAATTTTGTTCGAAATGACCTTATAGGTTGGCTAAAGTGGCTACGTGGTGTTGGCTTTCAAGATTTTCGTTTTGATTTTGCAAGAGGTTATTCGGCAAAATATGTGAAGGAGTATATTGAGGGCGCAAGACCAATATTTTCTGTTGGGGAGTACTGGGATCCTTGCAACTACAATAATAATGGGTTGGACTACAACCAAGATAGTCATAGACAACGGATTGTCAATTGGATTGATGGCACAGGACAACTTTCAGCTGCATTTGACTTCACAACAAAGGGAATCCTTCAGGAGGCGGTAAAGGGACAGTTCTGGCGTCTGCGTGACCGACAAGGAAAACCACCAGGTGTGATGGGTTGGTGGCCTTCAAGGGCTGTCACATTCATAGATAACCATGATACAGGCTCAACACAGGCTCATTGGCCTTTCCCTATGAATCATCTCATGGAGGGCTATGCATATATACTCACACATCCTGGTATACCAACAGTTTTCTATGACCATTTCTATGACTGGGCTGGCTCCATTCACAATGAAATTGCAAAGCTGATTGCTGTTAGGAAGGAGCAGGACATTCACAGTCGATCATCTATCAAGATCTTGGAGGCCCAGCCCAATCTCTACTCTGCTATCATTGGAGACAAAGTATGCATGAAGATTGGGGATGGCTCGTGGTGCCCAGGAGGCAGGGAGTGGACCCTTGCAACCAGTGGCCAAAGATACGCCGTATGGAAAAAGTAA 1236 0.4361 MGYMNNGFDESQQSDYGAVLRNGREILLQGFNWESHKHDWWRNLEKKVPDVAKSGFTSVWLPPASQSFSPEGYLPQNLYSLNSSYGSEHLLKNLLQKLNQHKVRAMADIVINHRVGTTQGHGGMYNRYDGIPLSWNEHAVTSCTGGLGNRSSGANFHGVPNIDHTQNFVRNDLIGWLKWLRGVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDPCNYNNNGLDYNQDSHRQRIVNWIDGTGQLSAAFDFTTKGILQEAVKGQFWRLRDRQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPMNHLMEGYAYILTHPGIPTVFYDHFYDWAGSIHNEIAKLIAVRKEQDIHSRSSIKILEAQPNLYSAIIGDKVCMKIGDGSWCPGGREWTLATSGQRYAVWKK* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0155 411 SMART aamy 25 352 IPR006047 GO:0005975
Vvi18g0155 411 Pfam Alpha-amylase C-terminal beta-sheet domain 355 410 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vvi18g0155 411 CDD AmyAc_arch_bac_plant_AmyA 26 363 - -
Vvi18g0155 411 PRINTS Alpha-amylase signature 288 300 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vvi18g0155 411 PRINTS Alpha-amylase signature 102 113 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vvi18g0155 411 PRINTS Alpha-amylase signature 185 196 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vvi18g0155 411 SUPERFAMILY Glycosyl hydrolase domain 357 411 - -
Vvi18g0155 411 Pfam Alpha amylase, catalytic domain 51 114 IPR006047 GO:0005975
Vvi18g0155 411 Gene3D - 357 411 IPR013780 -
Vvi18g0155 411 SUPERFAMILY (Trans)glycosidases 31 343 IPR017853 -
Vvi18g0155 411 PIRSF Alpha-amylase_plant 10 411 IPR013775 GO:0004556|GO:0005509|GO:0005975
Vvi18g0155 411 PANTHER ALPHA-AMYLASE 27 410 - -
Vvi18g0155 411 SMART alpha-amyl_c2 353 411 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vvi18g0155 411 Gene3D Glycosidases 25 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0155 Vvi-Chr18 1420222 1428120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0155 1 411 Glycoside Hydrolase AT1G76130 78.450 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0155 K01176 - vvi:100257481 880.552