Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0154 ATGGGGAATGGTTCAAGCGAAGAGGAGTTTGATGAACGAAGCGAGCGGCTCGAGAGTTACAGTCTGAGCGCGGATGTGAGCGAGTGTGAGAGTTTGAGTGGCTTTTCGTGTGACGGTGACGGTTACGGAGGAGGGGCTGTTTCTTCTCTGAACTACTCGCCGCTCGTCCGACCGGAGGTTGCAGTGAATTCCAGTTTCAGAGCGCCACCTCCGTTAACTTCGCCGGTTTTTGGTGGTGGACATGTGGTGATTCCGCCACGGAAGCCGGAGAAAGAGTTGTCCGAAGTTGAATTAATAAAGGAGCGGTTTGCAAAGCTTCTGCTTGGGGAAGATATGTCAGGCGGAGGGAAAGGAATTTCTACTGCACTTGCCATCTCCAATGCCATCACAAATCTTTCTGCTACTGTATTTGGGGAGCTATGGAAGTTGGAGCCATTGGCGCCAGAGAAGAAGTTGATGTGGCACCGAGAGATGGAATGGCTTTTATGTGTGAGTGATTCCATCGTCGAGCTCATTCCATCAGTGCAAGAATTCCCAGGTGGTGAGGGAACCTTTGAGGTTATGGTGACTCGGCCACGCTCTGATCTCTATATTAACCTTCCAGCACTTAAGAAAGTCGATGCAATGCTGCTTGGCATGCTAGATGATTTCTCTGATTCTGAATTCTATTATGTCGATCGTGGGGTAATTGTTTCTGGTGCTGATAATTGTGAAAGGCATTCTCTGTCTTCGCCATCAGGTAGGTCTTCAATTAGGCAGGAAGAGAAGTGGTGGCTCCCATTCCCTAGGGTCCCGCCAAATGGTTTGTCAGAAAGTGTAACAAATAGATTGCAGCAGTGCAAGGAATGGACGAATCAGATCCTCAAGGCGGCCATGGCAATTAATAGCAGTGTGCTGGCGGAGATGGAAATCCCAGATGTTTATTTGGACAGCCTGCCCAAGAGTGGAAAAGCTTGCTTAGGTGAAACCATCTATCGTTCTATAACAGCTCGTCAATTCTCCCCAGAATGTCTTCTTGATTATCTAGATCTCTCGTCAGAGTACACCACTCTGGAGATAGCTAATAGAATAGAGGCTGCTATTCACATTTGGAGGCAGAAGTACTTGAAAAGGCATACAAATCGTACAAAGGCTGGGAGATCATCATGGGGTGGCAAGGTCAAGGTCCTTGTTGGTTATATGGAAAAGAATAAGCTTCTAGCTCAACGGGCTGAAACAATCTTGCAGAACTTAAGGCTCCGGTTCCCTGGCCTCCCACAAACTGCTTTGGATATGGCCAAGATTCAATACAACAAGGATGTGGGGCAATCAATCCTCGAGAGCTACTCCAGGGTGATGGAAAGCTTAGCCTTCAACATAATGGCGAGAATAGATGATCTTCTATACATAGATGATGCCACAAAATTTCGTGCAGTAGCAGAGCCCATTTCTCTGTTCAAGCAGGATGGATATGGTGATGGTTGTCCCCTACGAAGGCAGATTTTACCTAGCCCCTTCTCTATCCAAAACACTTCCTATGTCTCTCAAATTGCTGCACCGGCATCTTATTCCTCTGCTATCAAGGAGAACAGAGATGGGAACCCAATTGATAGGAATTAA 1599 0.4715 MGNGSSEEEFDERSERLESYSLSADVSECESLSGFSCDGDGYGGGAVSSLNYSPLVRPEVAVNSSFRAPPPLTSPVFGGGHVVIPPRKPEKELSEVELIKERFAKLLLGEDMSGGGKGISTALAISNAITNLSATVFGELWKLEPLAPEKKLMWHREMEWLLCVSDSIVELIPSVQEFPGGEGTFEVMVTRPRSDLYINLPALKKVDAMLLGMLDDFSDSEFYYVDRGVIVSGADNCERHSLSSPSGRSSIRQEEKWWLPFPRVPPNGLSESVTNRLQQCKEWTNQILKAAMAINSSVLAEMEIPDVYLDSLPKSGKACLGETIYRSITARQFSPECLLDYLDLSSEYTTLEIANRIEAAIHIWRQKYLKRHTNRTKAGRSSWGGKVKVLVGYMEKNKLLAQRAETILQNLRLRFPGLPQTALDMAKIQYNKDVGQSILESYSRVMESLAFNIMARIDDLLYIDDATKFRAVAEPISLFKQDGYGDGCPLRRQILPSPFSIQNTSYVSQIAAPASYSSAIKENRDGNPIDRN* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0154 532 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g0154 532 Gene3D PRONE domain, subdomain 1 86 328 - -
Vvi18g0154 532 Gene3D PRONE domain, subdomain 1 329 473 - -
Vvi18g0154 532 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 64 477 IPR038937 GO:0005085
Vvi18g0154 532 FunFam Rop guanine nucleotide exchange factor 14 88 333 - -
Vvi18g0154 532 FunFam Rop guanine nucleotide exchange factor 14 335 473 - -
Vvi18g0154 532 ProSiteProfiles PRONE domain profile. 86 474 IPR005512 GO:0005085
Vvi18g0154 532 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 94 468 IPR005512 GO:0005085
Vvi18g0154 532 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0154 Vvi-Chr18 1404554 1408711 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0154 - - vvi:100245496 1023.46