Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0143 ATGATGATAGCCAAACAACAATCATGCCCACAACTCCTGCCACTGATTTTCATCACACTAGGCCTCACTCATGCCACCTATGGAGGCTACCTGATAGGCATCGGGAGCTACGACATGACCGGTCCAGCTGCAGATGTGAACATGATGGGGTATGCCAACATTGAGCAGCACTCCGCTGGGATCCATTTCCGGCTAAGGGCGAGGGCCTTCATTGTGGCTGAGGGTCCCCAGGGGGTCAGGTTTGCTTTTGTAAACCTTGATGCTGGAATGGCTTCACAGCTTGTTACAATCAAAGTACTTGAGAGACTCAAATCAAGGTATGGGAATTTGTACAATGAAGATAATTTGGCAATCAGTGGCACTCATACTCATGCAGGGCCAGGGGGCTATTTGCAGTATTATGTTTACTCTATAACTACTGCAGGCTTTGTCCCTCAGTCTTTTGATGCCATTGTCACTGCAGTTGAGCTGAGTATAGTTCAGGCTCATGAAAACCTCAAGCCTGGTTCAGTTTTCATCAACAAGGGGGATGTAGAGAATGCAGGAATTAGCAGGAGTCCAAGTGCTTACCTTGTCAACCCAGCAGACGAGAGAGCACGATATTCAACTGATGTTGATACCGAAATGACCCTTTTGAAGTTCATCAATGGGGAGAGCGGGAAGAGCATTGGAGCATTCAGCTGGTTTGCAACACATGGTACCTCTATGAGCAAAGACAACAGGCTTATCAGTGGAGACAACAAGGGTGCTGCTGCTAGATTCTTCGAGGATTGGTTCACTTCCACCACCAAATCATCCTCCAAAGTCATTGGCAACACATCTGCTACATTATATAGCAGACTGATTCAAAAGGCCAAGGAAATCAACGCCACAGGAGGGACAAGTTGTGGGAAAACAACCAGCCAAAGCTTCAAAGTTCGGAAGAATGATAACTCCCGATTTGTGGGAGCGTTTTGCCAATCCAATGTTGGAGATGTGACTCCAAACGTGCTTGGCGCATTCTGCAATGACACTGGATTGCCTTGTGATTTCAATCACTCCTCATGCCATGGCAATAACCAGCTTTGTCTGGGGCGTGGACCTGGATACCCTGATGAAATACTGAGCACAAAGATCATAGGGGAGAGACAGTTCCAAACTGCAGTGGATCTATTCAAGTATGCTAAAGAGGAATTGACAGGGAAGGTCGACTATCGCCATACGTATCTGAATTTTACAGATATTGAGGTGGAGTTAGATGGAAACAATGTGGTCAGGACATGCCCTGCAGCGCTTGGCCCAGGTTTTGCCGCTGGAACTACAGATGGACCGGGTTTCCCTGGATTTCAACAAGGAGATACAGAGATCAGTGAGGAGTGGAAGAGGTTTAGAGACTCCCTGAAAAAACCCAGCAAGTACCAAGAGGACTGTCAACAGCCCAAGCCTGTTTTGCTTGATACTGGTGAAATGTTCAAACCCTATGCCTGGGCACCAGCCATACTTCCCATTCAAATACTCAGGTTAGGGAAATTGGTCATCCTTTCTGTGCCAGGAGAGTTCACAACAATGGCAGGGCGGAGACTAAGGGAGGCAGTTAAGGAGACGCTTGTAAGTAATGGAAATGGGGAATTTGATGATGACACCCATATTGTAATAGCAGGTCTCACAAACACTTACTCGCAATATATTGCAACTTTTGAAGAATACAAGCAACAACGATATGAGGCTTCTTCAACACTTTATGGTCCACATACATTATCAGCATACATCCAGGAATTTAAGAAATTAGCCGAAGCAATGGCAAAGGGAGAAAACATGATCAAAGGCCCATCACCACCAGATCTTTCTTCTGTTCAACAAAGCTACTTAATCGACCCTACTGGTGACTCACCTCCCCCTGGCAAAAAATTTGGTGATGTAAAACAAGACATAACTATACCAAAACGCGGCTCATTCCAAAAGGGAGAAAGGCCAAGTGCCACATTTTGGAGCGCAAACCCTAGATATGACATATTGACAGAAGGCACATTTGCAGTGGTAGAGATGCTTCAAGGGGAACGGTGGGTTCCGGCCTATGATGATGATGATTTCTGCTTGTATTTCAAGTGGAAAGTAGAAAGTGGTACCTTCTATGGCCTAGCAACCATTGAATGGGAAGTGCCAGAGGATGCTGTCTCTGGGGTTTACCGGCTAAGGCACTTTGGATCATCAAAGAAAACAAAGGAATCCCCAACTGAATATTTTACCGGTGCCTCTAGTGCATTTTCAGTGTCATAA 2256 0.4592 MMIAKQQSCPQLLPLIFITLGLTHATYGGYLIGIGSYDMTGPAADVNMMGYANIEQHSAGIHFRLRARAFIVAEGPQGVRFAFVNLDAGMASQLVTIKVLERLKSRYGNLYNEDNLAISGTHTHAGPGGYLQYYVYSITTAGFVPQSFDAIVTAVELSIVQAHENLKPGSVFINKGDVENAGISRSPSAYLVNPADERARYSTDVDTEMTLLKFINGESGKSIGAFSWFATHGTSMSKDNRLISGDNKGAAARFFEDWFTSTTKSSSKVIGNTSATLYSRLIQKAKEINATGGTSCGKTTSQSFKVRKNDNSRFVGAFCQSNVGDVTPNVLGAFCNDTGLPCDFNHSSCHGNNQLCLGRGPGYPDEILSTKIIGERQFQTAVDLFKYAKEELTGKVDYRHTYLNFTDIEVELDGNNVVRTCPAALGPGFAAGTTDGPGFPGFQQGDTEISEEWKRFRDSLKKPSKYQEDCQQPKPVLLDTGEMFKPYAWAPAILPIQILRLGKLVILSVPGEFTTMAGRRLREAVKETLVSNGNGEFDDDTHIVIAGLTNTYSQYIATFEEYKQQRYEASSTLYGPHTLSAYIQEFKKLAEAMAKGENMIKGPSPPDLSSVQQSYLIDPTGDSPPPGKKFGDVKQDITIPKRGSFQKGERPSATFWSANPRYDILTEGTFAVVEMLQGERWVPAYDDDDFCLYFKWKVESGTFYGLATIEWEVPEDAVSGVYRLRHFGSSKKTKESPTEYFTGASSAFSVS* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0143 751 Gene3D - 620 751 IPR038445 -
Vvi18g0143 751 PANTHER CERAMIDASE 24 750 IPR006823 GO:0017040|GO:0046514
Vvi18g0143 751 Pfam Neutral/alkaline non-lysosomal ceramidase, N-terminal 30 584 IPR031329 -
Vvi18g0143 751 Pfam Neutral/alkaline non-lysosomal ceramidase, C-terminal 586 750 IPR031331 -
Vvi18g0143 751 FunFam Neutral/alkaline non-lysosomal ceramidase 619 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0143 Vvi-Chr18 1303910 1307352 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0143 K12349 - vvi:100248971 1518.44