Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0132 ATGGCTTCTTCTTCTACCACAAACCCCTTACTCTCTTCAACCCTGTTTGGCAATAGGATTCCAACGCCCAAGACAAGCAAATCCTCAATTCCTCTGCAGTTGTTTTCTAGAAGAAGGTTTGATGTGACTCGATCGATTCTCAATGGAAAACCCAGATCAGAATTGCCATCTAAGGCCGCTCTGGCTGCCATAATCGCCTCGTCTCTCGCCCCACAAGCCCTCGCAGTAGACAACGCTACACCACCTGTTCCGCCCCCTGTAATCGAAGCCCAACCCACTAAACCCAGCCCCTCAAACTCCTCACCCTTTGCTCAGAATCTTCTTCTCACAGCCCCTAAACCCCAAACGCAGTCTGACCTCCCAGAAGGTAGTCAATGGCGGTACAGCGAGTTCTTGAATGCGGTGAAGAAGGGGAAAGTGGAGCGAGTTCGGTTCAGCAAAGATGGCTCGGCCCTCCAACTCACCGCCGTCGATGGTCGTCGGGCCACCGTTATCGTCCCCAATGACCCCGACCTCATCGACATTTTAGCCATGAACGGCGTCGATATAACGGTTTCAGAGGGCGATTCTGGCAATGGCCTCTTCAATTTTATCGGCAATTTGCTGTTCCCGTTCCTCGCCTTCGCTGGACTTTTCTTTCTCTTTCGTCGTGCCCAAGGAGGTCCTGGCGGCCCCGGCGGACTGGGCGGGCCAATGGATTTTGGACGGTCCAAATCCAAGTTCCAGGAGGTTCCAGAGACCGGCGTTACATTCGCAGATGTCGCCGGAGCCGATCAGGCAAAACTGGAGCTGCAGGAGGTTGTCGATTTCTTGAAAAACCCTGATAAGTACACCGCCCTGGGAGCCAAAATTCCCAAGGGTTGTCTTTTGGTTGGACCACCCGGAACCGGCAAGACCCTACTGGCCAGAGCAGTGGCCGGAGAAGCAGGTGTGCCATTCTTCTCGTGCGCAGCCTCTGAATTCGTTGAATTGTTTGTAGGAGTGGGAGCATCCAGAGTCCGGGACTTGTTTGAGAAGGCAAAATCAAAGGCACCCTGCATTGTGTTCATTGATGAAATTGATGCAGTGGGGAGGCAGAGAGGGGCAGGTCTTGGAGGTGGGAATGATGAGAGAGAGCAAACCATCAATCAGCTGTTGACAGAGATGGATGGATTCTCCGGAAATTCAGGTGTCATTGTATTGGCTGCCACTAATAGACCAGACGTTCTTGATTCTGCATTGCTAAGGCCTGGGAGGTTCGATCGACAGGTTACTGTGGATAGGCCTGATGTTGCTGGTAGAGTTAAGATCCTTCAGGTGCACTCAAGAGGGAAGGCACTAGCCAAGGATGTAGACTTTGAAAAGATTGCGAGAAGGACCCCAGGCTTCACAGGGGCTGACTTGCAGAACCTGATGAATGAGGCAGCCATCCTCGCAGCTAGGCGTGACCTCAAGGAGATAAGCAAGGATGAGATATCTGATGCCCTGGAGAGGATAATTGCTGGGCCAGAGAAGAAAAATGCTGTGGTCTCAGACGAGAAGAAGAAATTAGTTGCCTATCATGAGGCTGGGCATGCATTGGTCGGTGCACTTATGCCTGAATATGACCCTGTGGCCAAGATATCCATCATTCCCCGTGGCCAAGCAGGTGGTCTTACCTTTTTTGCTCCAAGTGAAGAGAGACTCGAGTCTGGACTGTACAGTAGAAGTTACCTGGAGAATCAGATGGCTGTTGCACTGGGTGGAAGGGTTGCAGAAGAGGTAATATTTGGAGAGGATAATGTAACAACAGGGGCATCCAATGACTTTATGCAAGTTTCACGGGTGGCCAGGCAGATGGTGGAGAGATTTGGGTTCAGCAAAAAGATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTAGGTCAACAGATGTCATCGCAGAAAGACTATTCCATGGCAACTGCAGATATAGTGGATGCGGAAGTGAGGGAGTTGGTGGAGAAGGCATATTCAAGAGCCAAGCAGATCATGACAACTCACATTGACATCCTCCACAAGCTTGCACAACTCCTCATCGAGAAGGAAACCGTGGATGGAGAAGAGTTCATGAGTCTCTTTATTGATGGCAAGGCTGAATTATTCGTTGCTTAA 2121 0.5078 MASSSTTNPLLSSTLFGNRIPTPKTSKSSIPLQLFSRRRFDVTRSILNGKPRSELPSKAALAAIIASSLAPQALAVDNATPPVPPPVIEAQPTKPSPSNSSPFAQNLLLTAPKPQTQSDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVPNDPDLIDILAMNGVDITVSEGDSGNGLFNFIGNLLFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADIVDAEVRELVEKAYSRAKQIMTTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0132 706 Gene3D - 239 421 IPR027417 -
Vvi18g0132 706 NCBIfam ATP-dependent zinc metalloprotease FtsH 122 691 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vvi18g0132 706 Pfam ATPase family associated with various cellular activities (AAA) 289 420 IPR003959 GO:0005524|GO:0016887
Vvi18g0132 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 492 IPR027417 -
Vvi18g0132 706 FunFam ATP-dependent zinc metalloprotease FtsH 497 702 - -
Vvi18g0132 706 SUPERFAMILY FtsH protease domain-like 502 696 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi18g0132 706 Gene3D - 422 497 - -
Vvi18g0132 706 FunFam ATP-dependent zinc metalloprotease FtsH 422 496 - -
Vvi18g0132 706 FunFam ATP-dependent zinc metalloprotease FtsH 238 420 - -
Vvi18g0132 706 Gene3D - 121 191 - -
Vvi18g0132 706 ProSitePatterns AAA-protein family signature. 391 409 IPR003960 GO:0005524|GO:0016887
Vvi18g0132 706 FunFam ATP-dependent zinc metalloprotease FTSH, chloroplastic 121 192 - -
Vvi18g0132 706 MobiDBLite consensus disorder prediction 78 92 - -
Vvi18g0132 706 Gene3D Peptidase M41 498 701 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi18g0132 706 MobiDBLite consensus disorder prediction 76 105 - -
Vvi18g0132 706 SMART AAA_5 284 423 IPR003593 GO:0016887
Vvi18g0132 706 Pfam Peptidase family M41 502 695 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi18g0132 706 CDD RecA-like_FtsH 249 419 - -
Vvi18g0132 706 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 8 706 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vvi18g0132 706 PANTHER METALLOPROTEASE M41 FTSH 105 696 - -
Vvi18g0132 706 MobiDBLite consensus disorder prediction 1 28 - -
Vvi18g0132 706 Pfam AAA+ lid domain 443 486 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0132 Vvi-Chr18 1214938 1217804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0132 244 697 Miscellaneous Gene Families AT5G53170 50.219 1.54e-137 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0132 K03798 - vvi:100250509 1308.89