Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0122 ATGTCATCACAGGATCAGAAGAATCTCGTGAGAAAATTGGAATCATTGAGGACTTTTACAACCTCAAGAGATCACGATTGCTTCGGGTATGGAAGAAAATCAATTACCAGGCTCTTGCAGGTGCAAATTGTTGATGCACTTCGCTCAAACGAGAGAAGCAGGGCTTCGAGTTTGCTTTCAGAACTTGGCCGTGGAAACTACTCCTTAAGAGCTGATGATTTTATTTATATTCTTGAACACTGCTCAAAATCACCTGATCCCTTATTTGTCATGGAGATTTGGAGAATTATGGATGAAAAAGAGGTTCACGTGAACAATAGATGCTACATGCTTAGCATTCAAGCTCTCTGTAAAGGGGGTTACCTGGAGGAGGCGTTTAATTTATTGAATTTTGTTGGAGAAAATCATGATATCCATCCTATTCTGCCTATGTACAATAATTTCTTGAGAGGATGTGTTCAAACAAGGAGTCTACTTCACGCCAACCAATGCTTGGATCTGATGGAGCACCAAGTACTGGGGAAGAATGAAGTAACGTATTCACAGTTTCTCAAGCTTGCAGTTTTGCAGCAAAACCTGTCTGCTGCCCATAAAATTTGGAAGGAATATATGACATACTATAGTATGAGCATCATTTCTCTGCGGAAGTTTATTTGGTCCTTTACAAGGTTGAGAGATTTGGAATCGGCTTATGCAGCCTTGCAACATATGGTGGATTTGGTTTTCAAGGGAAGCATCTTTATCAATAAAAGTGCTGAAGGAAGGTTATGTTCTTCAAGATTGGACATTCCTATACCTAAGAATGGTGATATGGGTCTGAAGAGATGTATGGAGGAGAACGAACATTCTTTACCTTCTGTCTCTGATAATAGTAAGAAAATAGACTCTCATGCAAGTAATGTTGAGGACTCAACTATTTTTTATATGGGAAGTAAAGAAGATAAGGGTTTTGGCATAAATATGCTGGAAAAATATAAAGGCATGCCTGTAATGAAGGTTTTGAGGTGGTCTTTCAGTGATGTGATATATGCATGTGCACAAACTCAGAACTGTGGACTGGCAGAACAGTTAATCCTCCAGATGCAAAACCTTGGGTTGGAACCATCATGCCATACATACGATGGCTTAATCAAAGCAATTGTCAGTGACAGAGGTTTCAGTGATGGCATGGAAGTGTTAAAAACAATGCAACTGAGGAATTTGAAGCCATATGATTCAACTCTTGCTGCTCTTTCAATAGGTTCCAGCAAAGCTTTACAGCTGGATTTAGCAGAGTCTTTGCTGGATCAAATTTCCAGAATTTCATATGTTCATCCCTTTAATGCTTTTCTTGCAGCATGTGACACACTGGATCAACCTGAACGTGCTGTTCCAATACTGTCTAAGATGAAACAACTGAAGCTTCAGCCAAATGTTGGAACATATGAGCTGCTATTCTCCCTATTTGGTAATGTGAATGCGCCATATGAGGAGGGGAATATGTTGTCACAGGTTGATGTCGCTAGAAGGATAAAGGCTATAGAAATGGACATGATGAATAATGGCATTCAACACAGTCATTTATCAATGAAGAACTTGCTGAAAGCCCTTGGAGCAGAGGGGATGATAAGAGAATTGATGCAATACTTACATGTGGCAGAAAACCAATTCTTCCGTACTAACACTTATCTTGGAACTCCTATTTATAATACGGTGTTACATTCACTTGTTGAAGCCAAGGAAAGTCACATAGCAATAGAAATATTCAAAAATATGATTTCACGCAGTCTTCCGCGAGATGCTGCAACTTATAATATAATGATAGATTGTTGCAGTACTATAAAATGTTACAAATCAGCTTGTGCTCTGGTTTCTATGATGATGCGTGATGGTTTTCTTCCATGGACATTAACCTACACTGCTCTCATAAAGATTCTTTTAGAGCGTGAAGATTTTGATGAAGCATTGAATCTTCTAGATCAAGCAAGATTAGAAGAAATACCATCTGATGTCCTGTTATATAACACTATTCTTCAGAAAGCATGTCTAAAGGGAAGAATCGATTTGATTGAGCTTGTTGCTGAGCAGATGCACCAAGAGAAAATCCAGCCCGATCCATCAACCTGCTACTATGTGTTCTCTTCCTATGTGGACGGTGGTTTCTTCAGCACGGCCCTGGAATCATTGCAGGTTCTCAGTATGCGTATGATTTCTGAAGACAATAGCACTCTTGAGGAAAAGAGAACAGAATTGGAGGATTTCATCCATTCTGAAGACAAGGATGCAGAATCTCAGATCCTCCAGTTTTTTAAAGGTTCTGACGAGAATCTTGCTATTGCACTTTTAAATTTAAGATGGTGTGCCATATCTGGGTCCCCAATTTCATGGACACCGAATGAAAGTTTATGGGCCAGGAGACTTTTCAATAGTCATGGTTCCAGAAAAAGAGCATCCTGA 2436 0.3941 MSSQDQKNLVRKLESLRTFTTSRDHDCFGYGRKSITRLLQVQIVDALRSNERSRASSLLSELGRGNYSLRADDFIYILEHCSKSPDPLFVMEIWRIMDEKEVHVNNRCYMLSIQALCKGGYLEEAFNLLNFVGENHDIHPILPMYNNFLRGCVQTRSLLHANQCLDLMEHQVLGKNEVTYSQFLKLAVLQQNLSAAHKIWKEYMTYYSMSIISLRKFIWSFTRLRDLESAYAALQHMVDLVFKGSIFINKSAEGRLCSSRLDIPIPKNGDMGLKRCMEENEHSLPSVSDNSKKIDSHASNVEDSTIFYMGSKEDKGFGINMLEKYKGMPVMKVLRWSFSDVIYACAQTQNCGLAEQLILQMQNLGLEPSCHTYDGLIKAIVSDRGFSDGMEVLKTMQLRNLKPYDSTLAALSIGSSKALQLDLAESLLDQISRISYVHPFNAFLAACDTLDQPERAVPILSKMKQLKLQPNVGTYELLFSLFGNVNAPYEEGNMLSQVDVARRIKAIEMDMMNNGIQHSHLSMKNLLKALGAEGMIRELMQYLHVAENQFFRTNTYLGTPIYNTVLHSLVEAKESHIAIEIFKNMISRSLPRDAATYNIMIDCCSTIKCYKSACALVSMMMRDGFLPWTLTYTALIKILLEREDFDEALNLLDQARLEEIPSDVLLYNTILQKACLKGRIDLIELVAEQMHQEKIQPDPSTCYYVFSSYVDGGFFSTALESLQVLSMRMISEDNSTLEEKRTELEDFIHSEDKDAESQILQFFKGSDENLAIALLNLRWCAISGSPISWTPNESLWARRLFNSHGSRKRAS* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0122 811 NCBIfam pentatricopeptide repeat 596 628 IPR002885 -
Vvi18g0122 811 NCBIfam pentatricopeptide repeat 561 593 IPR002885 -
Vvi18g0122 811 Pfam Pentatricopeptide repeat domain 439 484 IPR002885 -
Vvi18g0122 811 Pfam Pentatricopeptide repeat domain 340 381 IPR002885 -
Vvi18g0122 811 Pfam Pentatricopeptide repeat domain 651 704 IPR002885 -
Vvi18g0122 811 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5 802 - -
Vvi18g0122 811 Pfam PPR repeat 113 130 IPR002885 -
Vvi18g0122 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 663 697 IPR002885 -
Vvi18g0122 811 Gene3D Tetratricopeptide repeat domain 437 559 IPR011990 GO:0005515
Vvi18g0122 811 Gene3D Tetratricopeptide repeat domain 560 765 IPR011990 GO:0005515
Vvi18g0122 811 Gene3D Tetratricopeptide repeat domain 321 436 IPR011990 GO:0005515
Vvi18g0122 811 Gene3D Tetratricopeptide repeat domain 36 214 IPR011990 GO:0005515
Vvi18g0122 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Vvi18g0122 811 Pfam PPR repeat family 561 604 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0122 Vvi-Chr18 1112216 1129335 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0122 337 738 Glycosyltransferase AT1G05670 18.093 5.76e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0122 - - vvi:100262486 1586.24