Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0121 ATGGCGACCATGGGAGAAGACACTGAACATATTGGTATCTTGGACACAGATCCAGGACTGGAACCATTTAAAGATCACTTCAGATATAGAATGAGGAGATATGTAGAGCAGAAAGAGCTTATTGAAAAATATGAAGGAAGTCTTGAGGAATTCGCACAAGGTTATTTGAAATTTGGATTTAACAGAGAAGAAGGTGGCATTGTGTACCGTGAGTGGGCCCCTGCTGCACAGGAAGCTCAAGTTATTGGGGACTTCAATGGATGGGATGGTTCCAACCACAGAATGGAAAGGAATCAGTTCGGTGTTTGGAGCATCAAGATTCCCGACTCTGGGGGAAATCCAGCCATTCCTCATAACTCACGAGTAAAGTTCCGATTCAAGCATGGTGATGGAGTTTGGGTTGATCGAATCCCTGCTTGGATCAGATATGCCACTGTGGACCCCACAGCATTTGCAGCACCATATGATGGTGTGTATTGGGACCCACCGCCTTCAGAAAGATATCAGTTTAAGTACCCTTGTCCTTCAAAACCCAATGCCCCACGAATATATGAGGCTCATGTTGGAATGAGTAGCTCCGAACCCCGTGTGAATTCATATAGAGAGTTTGCTGATGATATCTTACCTCGTATTCGGGCAAATAACTATAACACAGTTCAATTGATGGCTGTGATGGAGCACTCCTATTATGCATCATTTGGGTATCATGTTACTAACTTTTTTGCTGTCAGCAGTAGATCTGGAACTCCTGAGGACCTCAAATATTTGATTGATAAAGCCCATAGCTTAGGTTTAAGAGTCTTGATGGATGTTGTTCACAGCCATGCGAGTAACAATGTCACTGATGGCCTCAATGGCTTTGATGTTGGTCAAAGCTCACAGGATTCCTACTTCCATACCGGAGATCGAGGCTACCATGAGTTATGGGATAGCAAACTCTTTAACTATGCCAATTGGGAAGTTCTTCGCTTCCTAATATCCAACTTGAGATGGTGGCTAGAGGAGTTTAAATTTGATGGGTTTAGGTTTGATGGAGTAACTTCAATGCTGTATCATCACCATGGTGTCAACATGACATTTACAGGGAATTATAACGAGTATTTCAGTGAGGCAACAGATGTTGATGCTGTAGTTTATTTGATGCTGGCCAATTGTCTGATTCATAAAATCTTTCCAGATGCAACTGTAAGTGCCGAAGATGTTTCTGGCATGCCTGGTCTTGGTAGGCCAGTTGCCGAAGGGGGAACTGGTTTTGATTACCGCCTGGCAATGGCCATACCTGATAAGTGGATTGACTACTTGAAGAACAAGAAAGATGAAGAGTGGTCAATGAAGGAAATATCATCAAGCTTGACGAATAGGAGATACGCTGAGAAATGTATATCGTACGCCGAAAGTCATGATCAGGCCCTTGTGGGAGACAAAACTATTGCATTTCTTCTGATGGATAAAGAAATGTATAGTGGCATGTCCTGTTTAACGGATGCTTCTCCTACTATTGACCGAGGGATCTCACTTCACAAGATGATTCATTTTATAACAATGGCATTGGGAGGTGAGGGCTTTCTTAATTTCATGGGAAATGAGTTTGGCCATCCGGAGTGGATTGACTTCCCAAGAGAAGGCAATGATTGGAGTTATGAAAAATGCCGACGCCAATGGGAACTGGTGGATACAGATCACTTGAGATACAAGTACATGAATGCATTTGACACAGCTATGAATTTGCTGGATGAAAAATTTTCATTCCTTGCATCAACAAAACAGATAGTGAGCAGCACAGATGAAGAACATAAGGTTATTGTCTTTGAGCGTGGAGATCTTGTTTTTGTGTTCAACTTTCATCCAGAGAATACATACGACGGGTACAAAGTTGGGTGCGACTTGCCAGGGAAATATAGAGTTGCACTGGATAGTGATGCTTGTGTATTTGGTGGACAAGGAAGAGTGGGCCATGATGCAGACCATTTCACATCACCTGAAGGAATACCAGGAGTCCCTGAAACAAATTTCAACAACCGTCCCAATTCCTTCAAAGTACTCTCACCAGCTCGCACATGTGTGGTTTACTACAGAGTTGAAGAAAGTCTAGAAGAAAGTGATGATGATCACAATTCTACTGGTGCCAATGCAACTTTAGTAGCCGACGTGGTTGCTGAGCAGGAGAGTCTTGAGGAACCAGCTTCTGTTAAAGACCATGAGTTCAAGCCGAGATTGATTGAAGGTTCAGAAGTAGAAGATGTGGTGGAAGAGGCTACAGATGACTGA 2268 0.4299 MATMGEDTEHIGILDTDPGLEPFKDHFRYRMRRYVEQKELIEKYEGSLEEFAQGYLKFGFNREEGGIVYREWAPAAQEAQVIGDFNGWDGSNHRMERNQFGVWSIKIPDSGGNPAIPHNSRVKFRFKHGDGVWVDRIPAWIRYATVDPTAFAAPYDGVYWDPPPSERYQFKYPCPSKPNAPRIYEAHVGMSSSEPRVNSYREFADDILPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASNNVTDGLNGFDVGQSSQDSYFHTGDRGYHELWDSKLFNYANWEVLRFLISNLRWWLEEFKFDGFRFDGVTSMLYHHHGVNMTFTGNYNEYFSEATDVDAVVYLMLANCLIHKIFPDATVSAEDVSGMPGLGRPVAEGGTGFDYRLAMAIPDKWIDYLKNKKDEEWSMKEISSSLTNRRYAEKCISYAESHDQALVGDKTIAFLLMDKEMYSGMSCLTDASPTIDRGISLHKMIHFITMALGGEGFLNFMGNEFGHPEWIDFPREGNDWSYEKCRRQWELVDTDHLRYKYMNAFDTAMNLLDEKFSFLASTKQIVSSTDEEHKVIVFERGDLVFVFNFHPENTYDGYKVGCDLPGKYRVALDSDACVFGGQGRVGHDADHFTSPEGIPGVPETNFNNRPNSFKVLSPARTCVVYYRVEESLEESDDDHNSTGANATLVADVVAEQESLEEPASVKDHEFKPRLIEGSEVEDVVEEATDD* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0121 755 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 53 167 - -
Vvi18g0121 755 SUPERFAMILY (Trans)glycosidases 168 570 IPR017853 -
Vvi18g0121 755 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 586 694 - -
Vvi18g0121 755 MobiDBLite consensus disorder prediction 720 755 - -
Vvi18g0121 755 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 57 141 IPR004193 GO:0004553|GO:0005975
Vvi18g0121 755 FunFam 1,4-alpha-glucan branching enzyme 165 581 - -
Vvi18g0121 755 CDD E_set_GBE_euk_N 64 160 - -
Vvi18g0121 755 Gene3D Glycosidases 17 581 - -
Vvi18g0121 755 SUPERFAMILY E set domains 51 163 IPR014756 -
Vvi18g0121 755 Gene3D Immunoglobulins 53 167 IPR013783 -
Vvi18g0121 755 MobiDBLite consensus disorder prediction 725 745 - -
Vvi18g0121 755 PIRSF GlgB 2 703 IPR037439 GO:0003844|GO:0005978
Vvi18g0121 755 Gene3D - 586 702 IPR013780 -
Vvi18g0121 755 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 9 694 - -
Vvi18g0121 755 Pfam Alpha amylase, catalytic domain 228 320 IPR006047 GO:0005975
Vvi18g0121 755 SUPERFAMILY Glycosyl hydrolase domain 588 693 - -
Vvi18g0121 755 CDD AmyAc_bac_euk_BE 164 571 - -
Vvi18g0121 755 SMART aamy 203 563 IPR006047 GO:0005975
Vvi18g0121 755 Pfam Alpha amylase, C-terminal all-beta domain 592 692 IPR006048 GO:0003824|GO:0005975|GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0121 Vvi-Chr18 1102012 1108830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0121 13 690 Glycoside Hydrolase AT5G03650 58.696 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0121 K00700 - vvi:100257371 1557.73