Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0112 ATGTATGAGCTACATTTTGGGGTTCCAATGGCCGGGGCTGTTCTTTGTACCTTAAATATACGTCATGATTCGGCAATGGTGTCAACATTACTGAAACATTCGGAGGCCAAAATGATTTTTGTAGACTATCAACTTCTTGATACTGCTCAGGGAGCACTAGAAATTCTATCCAAGACAAGAACCAAGCTGCCCCGTCTAGTGTTAATTCCAGAGTGTGATAAACTACAGCCCACTATTAGCAACTCCGGTCCCACTGTTGCTGGAGACTTAGAGTATGAGACTCTTATAGCAATGGGGAAAACTGACTTTGATATTAGATGGCCAAACGATGAATGGGATCCCATTGCACTGAATTACACTTCAGGCACAACATCTCGTCCAAAAGGTGTTATTTATAGCCATAGAGGTGCCCATCTCAATTCCCTGGCTGCTGTTCTCCTTAATGAAATGGGCTCAATGCCTGTCTATTTGTGGACCGTTCCCATGTTTCACTGCAATGGGTGGTGCCTCACTTGGGGTGTGGCAGCCCAGGGGGGCACCAATGTCTGCCTAAGAAATGTGACCGCAAAGGGAATATTTGACAGTATTTCTCAGCACAGGGTTACCCACATGGGTGGTGCACCTACTGTTTTGAACATGATCATTAATGCTCCGGTCGGTGATCAGAGGCCACTTCCAGGCAAGGTGGCTGTGATGACAGGCGGTGCCCCTCCACCTCCACAAGTACTTTTCAACATGAAAGAACTGGGATTTGGGGTATTTCATTCATATGGCTTGACAGAAACCTATGGTCCTGGAACTGTTTGCACTTGGAAACCTGAGTGGGATCTTCTGCCTCCTGACAAGCAAGCAAAGATCAACGCCCGGCAAGGGTTGCATCATCTTGGCATGGAGGAGGTCGACATAAAAGACCCTGTTACTATGAAGAGCGTACCACCTGATGCAAAAACCATAGGTGAGGTTATGTTCAGAGGCAACACTGTGATGAATGGATACTTAAAAGATATCAAAGCAACCGAGGAATCTTTTAAAGGTGGGTGGTTTCGTAGTGGGGACTTGGGGGTGAAACATCCTGATGGCTACATAGAGCTAAAGGATCGTTCAAAGGATATTATCATTTCTGGGGGAGAGAATATAAGCACAATTGAGGTAGAAGCTGTGCTTTTTAGTCACCCAGCAATCCTTGAGGCAGCTGTGGTAGGAAGGCCTGATGACCACTGGGGGGAGACACCATGTGCATTTGTGAAGTTGAAGGAAGGCTGTAATGCAAATGCCAATGAGATTATTAAGTTTTGCCGCAATAAGTTGCCCCATTATATGGCTCCTAAAACCGTTGTTTTTTATGATCTGCCAAAGACTTCCACAGGAAAGACGCAGAAATATATTCTCAAGGAGAAAGCCAAGGCCATGGGGAGCCTTTCAAAAAGGAGCTCCTCTAAAATGTAA 1446 0.4564 MYELHFGVPMAGAVLCTLNIRHDSAMVSTLLKHSEAKMIFVDYQLLDTAQGALEILSKTRTKLPRLVLIPECDKLQPTISNSGPTVAGDLEYETLIAMGKTDFDIRWPNDEWDPIALNYTSGTTSRPKGVIYSHRGAHLNSLAAVLLNEMGSMPVYLWTVPMFHCNGWCLTWGVAAQGGTNVCLRNVTAKGIFDSISQHRVTHMGGAPTVLNMIINAPVGDQRPLPGKVAVMTGGAPPPPQVLFNMKELGFGVFHSYGLTETYGPGTVCTWKPEWDLLPPDKQAKINARQGLHHLGMEEVDIKDPVTMKSVPPDAKTIGEVMFRGNTVMNGYLKDIKATEESFKGGWFRSGDLGVKHPDGYIELKDRSKDIIISGGENISTIEVEAVLFSHPAILEAAVVGRPDDHWGETPCAFVKLKEGCNANANEIIKFCRNKLPHYMAPKTVVFYDLPKTSTGKTQKYILKEKAKAMGSLSKRSSSKM* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0112 481 FunFam 2,3-dihydroxybenzoate-AMP ligase 369 471 - -
Vvi18g0112 481 Gene3D - 370 471 IPR045851 -
Vvi18g0112 481 ProSitePatterns Putative AMP-binding domain signature. 117 128 IPR020845 -
Vvi18g0112 481 CDD ttLC_FACS_AEE21_like 1 465 - -
Vvi18g0112 481 Pfam AMP-binding enzyme C-terminal domain 383 457 IPR025110 -
Vvi18g0112 481 Gene3D - 1 369 IPR042099 -
Vvi18g0112 481 PANTHER ACYL-ACTIVATING ENZYME 1 475 - -
Vvi18g0112 481 SUPERFAMILY Acetyl-CoA synthetase-like 2 468 - -
Vvi18g0112 481 Pfam AMP-binding enzyme 2 374 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0112 Vvi-Chr18 993428 994873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0112 1 481 Miscellaneous Gene Families AT1G20560 69.854 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0112 - - vvi:100247942 994.186