Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0108 ATGTCTTCCAGAAAGCACCCATCTCTGTCTTCAGTTCCACAGGCGCCGGGGACGGATGGTTATCAGGGTTACACCTTCAAAGACAAAGACACCCATGTCGCGAGTGTCATGAAACCCCACTTCAAATACGGTCTCTATCTCTTTTTCTTTCTCACCATCTGGTTTCTTCTGCTTTTCTTCTGGTTTCCCTCCACAAAACCGGCCGTTTCTCCTCCCATTATTCAGAATTCGAATAGTCATGTGCAAAATCCGCCGGCGGAGAAGGTGCAAGTGAAACTGGAGGAGAAAGTGCAGGTGAAACCGGCGGAGAAGGCACAGGTGAAGCCGGCGGAGAAAGCCCATGTGAAGCCGGCGAAGAAAGCGTCGGTATTGGTGTACGTCTATGAACTGCCGCCGAAGTTCAACATTGGTCTCCTCAAGGAGTGCCGCCGTCTGAATGTGTACACGGATATGTGTCCACACGTGGCGAACTGTGGACTTGGGCAGCCGATTTTGGAGATGGGGTCGAGCTGGTTCGCGACCCACCAGTTCATCGCGGAGATGATATTTCACGCGCGGATGGAGAACCATCCATGTCGCACGCGCGATCCGGAGAAGGCGGACTTGTTCTACGTGCCATTTTACGGAGGACTCCACGCATCGAGCAAGTTTCGGGAGAGTAACCTGGCGGCGCGTGATGCTTTAGCGGTGGAACTGGTGGAGTACATCCACCGACAGCGGTGGTGGCGGCGGAATCACGGCGCGGACCACTTCTTGGCGCTGGGGAGGACGGCGTGGGACTTCATGAGAACCGACGGTGGCACTGACTTTGGAGCAAACCGTCTCTTGAATCTGCCACCTGTCAAAAACATGTCGGTGTTGACCGTGGAAAGACACCCATGGGAAGGCTCGAACCAGTACGGCATCCCCTATCCCTCCTACTTCCACCCCTCCACGTCCAACGAGATCCTGACGTGGCAGAACCGTATGCGGCTGCAGCGCCGACTCCACCTCTTCTCTTTTATCGGGGCTCCGAGGAACGGCGTGGAGAAGGCGGCGATCAGGGACGAGGTCATAAAACAGTGCGCCGAGTCAGCACGGTGCCACCTCCTGAAATGCGGCAGCGGAGCGAGTCAATGCCACGAGCCAACTCAGGTGCTCAACGTCATGACCCAGTCGGAGTTCTGCATCCAAGCCCCCGGCGACTCGTTCACGCGACGATCCACCTTCGACTCATTTCTCGCCGGTTGTATCCCGGTCTTTGTCTCACCCCACACAGCGTATTCTCAGTACTCATGGTTCCTCCCATCCGACCACACCACCTACTCCGTCTTCATCGGAGACGAGAACCCCAGCATAGAAGCTGAACTTCTGAAGATTCCAAACGATCAAATACAGAAAATGAGAAACAGAGTCATAAATTTGATTCCAAATCTCACGTATATTCACCCAAACAGTAGTGATTTCGGTTTCACCGACGCCGTCGATGTTGCACTGGGGAAATTGTCCGATTACGTGAAGTCCAAGTTACGAGGACATGGCGTGACGGTCCATTGA 1536 0.5449 MSSRKHPSLSSVPQAPGTDGYQGYTFKDKDTHVASVMKPHFKYGLYLFFFLTIWFLLLFFWFPSTKPAVSPPIIQNSNSHVQNPPAEKVQVKLEEKVQVKPAEKAQVKPAEKAHVKPAKKASVLVYVYELPPKFNIGLLKECRRLNVYTDMCPHVANCGLGQPILEMGSSWFATHQFIAEMIFHARMENHPCRTRDPEKADLFYVPFYGGLHASSKFRESNLAARDALAVELVEYIHRQRWWRRNHGADHFLALGRTAWDFMRTDGGTDFGANRLLNLPPVKNMSVLTVERHPWEGSNQYGIPYPSYFHPSTSNEILTWQNRMRLQRRLHLFSFIGAPRNGVEKAAIRDEVIKQCAESARCHLLKCGSGASQCHEPTQVLNVMTQSEFCIQAPGDSFTRRSTFDSFLAGCIPVFVSPHTAYSQYSWFLPSDHTTYSVFIGDENPSIEAELLKIPNDQIQKMRNRVINLIPNLTYIHPNSSDFGFTDAVDVALGKLSDYVKSKLRGHGVTVH* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0108 511 Pfam Exostosin family 121 444 IPR040911 -
Vvi18g0108 511 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 59 471 IPR004263 GO:0006486|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0108 Vvi-Chr18 976534 978069 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0108 K20888 - vvi:100265086 1038.48