Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g0107 | ATGCTTCTTCTGCCGGCGCCGCTTCCGACTCGATTCCCTTCGTATCATTTCTTATCTCCGGTTCTCCGCGACCACCGCATTCTCCAGCCACCACTCCTCGCCACCACCTCTGCTGCCGTCACCACCGCTTCTGGAGAAGCCTCTCAGTTCTCCAAGCCACTCAACGAATACGGCAGCAGCGGCGACCTTAATTCTGTGCCGAACCGCCGCTACGACTTCACTCCACTGCTCCGGTTTCTGTCCAATTCAGAATCCGACTCTGATTCCGGAGCCGAAGTCGAGTCTCCTCCTCCGACCTCTCTGGACTTCACTGAGTTCCAGCTAGTGGAGTCTTACCGAGCCGTGCCGGCTCCGCTGTGGCACTCGCTCCTTAAATCGCTATGCTCAGATTCGTCCTCAATTGGAACTGCGTATTCCCTAGTTACATGGCTTGAGAGGCACAATCTCTGTTTTTCTTACGAGTTGCTCTACTCGATTCTTATTCACGCTCTGGGACGCTCCGAGAAGCTTTACGAAGCGTTCTTGCTTTCTCAGAGACAAACCCTAACTCCATTGACATACAATGCCCTAATTGGGGCCTGTGCTCGTAACGATGACCTCGAAAAAGCCCTAAATTTGATGTCTCGGATGCGCCGTGATGGTTTCCCATCCGATTTCGTGAATTACAGCTTCATAATTCAGTCGCTGACTCGTACTAACAAGAGTGATTCTTCAATGTTGCAGAAAATTTATGCGGAGATTGAGTCAGATAAGATTGAGCTTGATGGACAGCTCTTGAATGATATAATCGTGGGGTTTGCGAAATCTGGTGATGTGAACCGGGCAATGTCCTTTCTGGCCATGGTACAGGGCAATGGGTTGAGCCCAAAAACTGCTACTCTTGTTGCAGTTATAACTGCATTGGGGAATGCTGGTAGGACAGAGGAGGCGGAGGCTATTTTTGAGGAGTTAAAAGAAGGTGGATTGATGCCAAGGACAAGGGCTTATAATGCTCTTCTCAAAGGGTACGTGAAAACAGGTTCTTTGAAAGATGCTGAATCCATTGTGTCGGAGATGGAGAGGAGTGGGTTTTCCCCAGATGAGCACACTTATAGTCTTCTTATTGATGCATATGCAAATGCAGGTAGGTGGGAAAGCGCAAGAATTGTGTTGAAGGAAATGGAAGCAAGTGGTGTACGGCCTAATTCTTATGTTTTTAGCAGAATTTTAGCAAGTTATCGTGATAGAGGAAAATGGCAAAAATCATTTCAGGTTCTGAGGGAGATGAGGAATAGCGGGGTGTCCCCTGATAGGCATTTTTACAATGTGATGATTGATACTTTTGGCAAGTGTAATTGTCTAGATCACGCACTGGCCACATTTGACCGGATGAGAATGGAGGGTGTACAGCCTGATGCTGTCACATGGAATACGCTCATAGATTGTCACTGTAAGTCTGGGCACCACAATAAAGCAGAGGAGTTGTTTGAGGCAATGCAGGAAAGTGGGTGCTCTCCTTGCACTACAACATATAATATTATGATTAATTCTTTTGGGGAGCAGGAGAGATGGGAGGATGTGAAGACCTTGTTGGGGAAGATGCAGAGTCAGGGGTTGTTGGCCAATGTTGTTACATACACCACACTGGTTGATATTTATGGACAATCAGGGAGATTTAAGGATGCAATAGAGTGCTTGGAGGTCATGAAATCTGTTGGGTTGAAGCCATCCTCAACCATGTATAATGCACTAATTAATGCATATGCACAAAGGGGTTTGTCTGAGCAAGCAATAAATGCATTTAGGGTCATGAGAGCAGATGGTCTAAAGCCCAGTGTGTTGGTTCTCAACTCCTTAATCAATGCATTTGGTGAGGATAGAAGGGATGCTGAAGCTTTTTCTGTGTTGCAGTACATGAAGGAAAATGACTTGAAGCCAGATGTTGTTACATATACTACACTCATGAAAGCTCTAATTCGGGTTGAGAAGTTTGACAAGGTTCCAGCTGTGTATGAAGAAATGACTCTATCTGGGTGTACTCCAGATAGGAAAGCCAGAGCAATGTTGCGGTCTGCTCTCAGATACATGGAGCGAACACTAAAATCATAG | 2088 | 0.4631 | MLLLPAPLPTRFPSYHFLSPVLRDHRILQPPLLATTSAAVTTASGEASQFSKPLNEYGSSGDLNSVPNRRYDFTPLLRFLSNSESDSDSGAEVESPPPTSLDFTEFQLVESYRAVPAPLWHSLLKSLCSDSSSIGTAYSLVTWLERHNLCFSYELLYSILIHALGRSEKLYEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAMLRSALRYMERTLKS* | 696 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0107 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 325 | 359 | IPR002885 | - | |
| Vvi18g0107 | 695 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic isoform A | 406 | 515 | - | - | |
| Vvi18g0107 | 695 | PANTHER | MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 | 324 | 605 | - | - | |
| Vvi18g0107 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 360 | 394 | IPR002885 | - | |
| Vvi18g0107 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 430 | 464 | IPR002885 | - | |
| Vvi18g0107 | 695 | Gene3D | Tetratricopeptide repeat domain | 121 | 283 | IPR011990 | GO:0005515 | |
| Vvi18g0107 | 695 | Gene3D | Tetratricopeptide repeat domain | 294 | 407 | IPR011990 | GO:0005515 | |
| Vvi18g0107 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 290 | 324 | IPR002885 | - | |
| Vvi18g0107 | 695 | Gene3D | Tetratricopeptide repeat domain | 597 | 694 | IPR011990 | GO:0005515 | |
| Vvi18g0107 | 695 | Gene3D | Tetratricopeptide repeat domain | 408 | 527 | IPR011990 | GO:0005515 | |
| Vvi18g0107 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 395 | 429 | IPR002885 | - | |
| Vvi18g0107 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 605 | 639 | IPR002885 | - | |
| Vvi18g0107 | 695 | Pfam | Pentacotripeptide-repeat region of PRORP | 187 | 376 | IPR033443 | - | |
| Vvi18g0107 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 535 | 569 | IPR002885 | - | |
| Vvi18g0107 | 695 | FunFam | Uncharacterized protein | 516 | 694 | - | - | |
| Vvi18g0107 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 640 | 674 | IPR002885 | - | |
| Vvi18g0107 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 255 | 289 | IPR002885 | - | |
| Vvi18g0107 | 695 | NCBIfam | pentatricopeptide repeat | 296 | 324 | IPR002885 | - | |
| Vvi18g0107 | 695 | NCBIfam | pentatricopeptide repeat | 503 | 535 | IPR002885 | - | |
| Vvi18g0107 | 695 | NCBIfam | pentatricopeptide repeat | 186 | 218 | IPR002885 | - | |
| Vvi18g0107 | 695 | NCBIfam | pentatricopeptide repeat | 573 | 606 | IPR002885 | - | |
| Vvi18g0107 | 695 | NCBIfam | pentatricopeptide repeat | 537 | 570 | IPR002885 | - | |
| Vvi18g0107 | 695 | NCBIfam | pentatricopeptide repeat | 610 | 641 | IPR002885 | - | |
| Vvi18g0107 | 695 | NCBIfam | pentatricopeptide repeat | 642 | 675 | IPR002885 | - | |
| Vvi18g0107 | 695 | NCBIfam | pentatricopeptide repeat | 328 | 361 | IPR002885 | - | |
| Vvi18g0107 | 695 | NCBIfam | pentatricopeptide repeat | 362 | 395 | IPR002885 | - | |
| Vvi18g0107 | 695 | NCBIfam | pentatricopeptide repeat | 467 | 499 | IPR002885 | - | |
| Vvi18g0107 | 695 | NCBIfam | pentatricopeptide repeat | 434 | 466 | IPR002885 | - | |
| Vvi18g0107 | 695 | NCBIfam | pentatricopeptide repeat | 398 | 430 | IPR002885 | - | |
| Vvi18g0107 | 695 | Pfam | PPR repeat family | 604 | 652 | IPR002885 | - | |
| Vvi18g0107 | 695 | Pfam | PPR repeat family | 464 | 511 | IPR002885 | - | |
| Vvi18g0107 | 695 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic isoform A | 116 | 282 | - | - | |
| Vvi18g0107 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 500 | 534 | IPR002885 | - | |
| Vvi18g0107 | 695 | Pfam | Pentatricopeptide repeat domain | 523 | 583 | IPR002885 | - | |
| Vvi18g0107 | 695 | Pfam | Pentatricopeptide repeat domain | 383 | 443 | IPR002885 | - | |
| Vvi18g0107 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 183 | 217 | IPR002885 | - | |
| Vvi18g0107 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 465 | 499 | IPR002885 | - | |
| Vvi18g0107 | 695 | SUPERFAMILY | TPR-like | 461 | 596 | IPR011990 | GO:0005515 | |
| Vvi18g0107 | 695 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic isoform A | 294 | 405 | - | - | |
| Vvi18g0107 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 570 | 604 | IPR002885 | - | |
| Vvi18g0107 | 695 | Gene3D | Tetratricopeptide repeat domain | 528 | 596 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0107 | 327 | 685 | Glycosyltransferase | AT1G05670 | 22.802 | 3.21e-27 | 115 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g0107 | - | - | vvi:100263329 | 1353.58 |