Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0106 ATGGGCGGATCTCGAGTTCAGGTCAATAAGGCCCACAAGACTCGATTCTCTTCCAAATCAAGTCGTCAAGTCCACAAAACTTCTCTCCAAGAGAAGAGCAGGATTACAAAGCCGGGAAGCAATGTTGCCAAGGGAGCAAAAGCTGCTCGCCTGCAACGGAACAAGATGATACGGGACCAGAAACGGGCAGCCATTTTGAAAGAGAAAAGGGCTTCAAGTGGATCCACAAGCCCTCCCCGGGTTATTGTTATTTTTGGTCTTTCTGCCTCTGTGAACGTAAATTCAGTGGAGGATGATCTCTTAACATTATTATCTTCAAAGGGAAATGAACCCGTGTTTTCTACGGTTGCTTCTTCCGAGTACAAACTGAGGACAACAGTACTGAAAGCACCTCATGGAGATTTGTCTTCATGCATTGAAATGGTTAAGGTTGCCGATTTGATTGCTTTTGTAGCATCTGCCAGCTGTTCGTGTGAGGAAGGCACTTCCAATTATTATATTGATTCATTTGGCACTCAGTGCCTTTCTGTTTTTAGAGCTCTTGGTTTACCAAGCACTGTAGTGTTGATTCGCGATCTACCTCCTGAGCAGAAACAAAGACATGAGTTGAAGAAAATGTGCAGTTCTTCCCTTTCTTCTGAATTTCCTGAGGATTGTAAATTTTATCCTGCAGATACAAAGGATGAGTTGCATAAGTTCATGTGGCTTTTCAAGGAGCAAAGGCTTTCAGTTCCTCACTGGCGTAATCAACGGTCATACCTTATGGCTCAAAAGGTTGATTTGGTACCCGATGATTGCAACTCAGGAAATTGTACCCTGCTCCTTACTGGTTATCTGCGTGCTCATGGTCTCTCAGTGAATCAGCTGGTCCATATTTCAGGTGCAGGGGATTTTCAGTTGTCCAAAATTGAAATTCTCAAGGATCCATTTCCTTTGAATGCAAGAAAAGGACAGGATCTTATGGATTCAGATGAATTAAATGATGAGCAGGTTATTCGTTCCTTAGCTCCTGATAAATTGAAGCAAGAGCCTTTAATCATTGAAAATGTTCCAGATCCTCTTGCAGGAGAACAGACGTGGCCAACAGAGGCAGAAATGGCTGAGGCTGATAGGAATCAAAAACAAAAAAATCTGAAAAAGAGGATTCTTCCTCGAGGTACTTCAGAATACCAGGCTGCTTGGATTGTGGATGATACAGATGTGGAGGATTCAGATAGGAGTGATGATGATGATGCTGGTGATGGAATGGTGTTAGATGAAAATGAAAGTTGTCTTCCCGGTCATGAGGGAAACAATAATTTTGACCTTGATGATGACCAAGCTTCTCTTTCACTTGACTCCAGGGACAATGATGAACAAACTGATGTTGATTCAGTAATGATGGAAGGTGAGAACTTGACAAGGGAGCAGATCGAGGATGAAATTAAAAAACTTAAAGATGCGCATGCTGAAGATGAGGAGTATCCTGATGAAGTGGATACCCCCTTGGATGTTCCGGCGAGAAAGCGTTTTGCCAAGTATAGAGGCCTCAAGTCCTTTAGAACGTCTTCATGGGACCCTAAAGAATCTCTACCTCCAGAATATGCTAGAATTTTCTCATTTGATAATTTTGCAAGAACACAAAAGCATGTTCTTGCAAAAGCTCTAGATATGGAGCAAGGGTACATGGATGACTGTCTACCAGCTGGCACATACATAAGGCTTCATATCAGGGAGGTACCAGTTAGTGTTGCCTCCAAGTTATGTATGCTTGGGAAGAGAATGCCAGTGATTGCATGTGGCCTTTTGCAACATGAGTGCAAGATGTCAGTCCTTCACTTTAGCATAAAGAAGCATGACGCTTATGATGCTCCTATCAAATCCAAAGAAGAACTAGTATTTCATGTTGGTTTCCGCCAATTTGTCGTTAGGCCAATATTTTCTTCTGATAATATGAATTCAGACAAACACAAAATGGAAAAGTTTCTTCATGCAGGACGTTTCTCCATAGCATCGGTTTATGCCCCGATTTCCTTTACTCCTCTTCCTTTGATAGCCTTGAAGAGTGTGAATGATGTTGCTGCCTCACCTGCTGTTGTTGCATTTGGTTCTTTGAGATGTGTTGACCCAGACAGGATTATTCTGAAGAAAATTATCTTAACTGGTTACCCTCAAAGAGTGTCAAAACTGAAAGCCGCAGTAAGATACATGTTTCACAGCCCAGATGATGTGAGATGGTTCAAACCTGTGGAAGTGTGGACAAAATGTGGTCGCCGGGGTCGTGTCAAGGAGCCCGTTGGTACACATGGTATGGTGCTTTGTGTTCCATGTTAA 2313 0.4259 MGGSRVQVNKAHKTRFSSKSSRQVHKTSLQEKSRITKPGSNVAKGAKAARLQRNKMIRDQKRAAILKEKRASSGSTSPPRVIVIFGLSASVNVNSVEDDLLTLLSSKGNEPVFSTVASSEYKLRTTVLKAPHGDLSSCIEMVKVADLIAFVASASCSCEEGTSNYYIDSFGTQCLSVFRALGLPSTVVLIRDLPPEQKQRHELKKMCSSSLSSEFPEDCKFYPADTKDELHKFMWLFKEQRLSVPHWRNQRSYLMAQKVDLVPDDCNSGNCTLLLTGYLRAHGLSVNQLVHISGAGDFQLSKIEILKDPFPLNARKGQDLMDSDELNDEQVIRSLAPDKLKQEPLIIENVPDPLAGEQTWPTEAEMAEADRNQKQKNLKKRILPRGTSEYQAAWIVDDTDVEDSDRSDDDDAGDGMVLDENESCLPGHEGNNNFDLDDDQASLSLDSRDNDEQTDVDSVMMEGENLTREQIEDEIKKLKDAHAEDEEYPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFSFDNFARTQKHVLAKALDMEQGYMDDCLPAGTYIRLHIREVPVSVASKLCMLGKRMPVIACGLLQHECKMSVLHFSIKKHDAYDAPIKSKEELVFHVGFRQFVVRPIFSSDNMNSDKHKMEKFLHAGRFSIASVYAPISFTPLPLIALKSVNDVAASPAVVAFGSLRCVDPDRIILKKIILTGYPQRVSKLKAAVRYMFHSPDDVRWFKPVEVWTKCGRRGRVKEPVGTHGMVLCVPC* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0106 770 SMART DUF663_2 491 770 IPR007034 -
Vvi18g0106 770 MobiDBLite consensus disorder prediction 394 455 - -
Vvi18g0106 770 PANTHER RIBOSOME BIOGENESIS PROTEIN 1 767 IPR039761 GO:0042254
Vvi18g0106 770 MobiDBLite consensus disorder prediction 1 49 - -
Vvi18g0106 770 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 78 243 IPR030387 -
Vvi18g0106 770 MobiDBLite consensus disorder prediction 441 455 - -
Vvi18g0106 770 MobiDBLite consensus disorder prediction 396 417 - -
Vvi18g0106 770 Pfam AARP2CN (NUC121) domain 229 309 IPR012948 GO:0005634|GO:0042254
Vvi18g0106 770 SMART aarp2cn2 229 310 IPR012948 GO:0005634|GO:0042254
Vvi18g0106 770 Coils Coil 461 488 - -
Vvi18g0106 770 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 492 767 IPR007034 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0106 K14799 - vvi:100259903 1493.02