Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0102 ATGGATCCGTACAAGTACCGCCCTTCGAGTGCTTACAACTCCCCCTTCTGGACCACCAATTCCGGTGCTCCTGTCTGGAACAATAACTCATCCTTGACTGTTGGACCAAGAGGTCCAATTCTCCTAGAGGATTATCACCTGGTGGAGAAACTTGCCAATTTTGATCGGGAGCGGATCCCAGAACGTGTTGTGCATGCCAGGGGAGCCAGTGCCAAGGGTTTCTTTGAGACCACCCATGATATTTCTAACCTTACATGTGCTGATTTCCTTCGAGCCCCAGGGGTCCAGACACCTGTCATTTTACGTTTCTCCACAGTTATTCATGAGCGTGGCAGCCCTGAAACCCTGAGGGATCCTCGAGGTTTTGCAGTGAAGTTTTACACCAGAGAGGGTAACTTTGATCTAGTGGGAAACAATTTCCCTGTCTTTTTTATCCGTGATGGAATGAAATTCCCAGACATGGTCCATGCTCTGAAACCCAATCCTAAGTCCCACATCCAGGAGAACTGGAGGATTGTTGATTTCTTCTCCCACCACCCAGAAAGCCTGCACATGTTCTCATTCCTCTTCGATGATGTAGGTATTCCACAGGATTACAGGCACATGGAAGGATCTGGTGTGAACACCTATACTCTGATCAACAAGGCTGGAAAAGCACATTATGTGAAATTTCACTGGAAACCCACTTGTGGGGTTAAGTGTCTGTTGGAAGAAGAGGCAATCAGGGTTGGAGGAAGCAACCACAGCCATGCCACTCAGGATCTCTATGACTCCATTGCAGCTGGGAACTATCCTGAGTGGAAACTTTTCATCCAAACAATTGATCCTGATCATGAAGACAAATTTGACTTTGACCCACTTGATGTCACCAAGACCTGGCCTGAGGACATACTACCCCTGCAACCAGTCGGTCGCCTGGTCTTGAACAGGAACATTGACAACTTCTTTGCTGAAAATGAACAGCTTGCATTTTGCCCTGCTATTGTGGTTCCTGGTGTCTACTATTCAGATGACAAGTTGCTACAAACTCGGATCTTCTCCTATTCTGATACTCAGAGGCACCGCCTTGGACCAAACTATCTGCAGCTCCCGGCTAATGCCCCCAAGTGTGCTCATCATAACAATCATCATGAAGGTTTCATGAATTTCATGCACAGGGATGAGGAGGTCAATTACTTCCCTTCAAGGTATGATCCTGTTCGTCATGCTGAGAGGTACCCCATTCCTCCTGCTATCTTGACTGGAAGGCGTGAAAAGTGCATCATTCCAAAGGAGAACAACTTCAAGCAGCCAGGAGAGAGATACCGGTCCTTTGCGCCAGACAGGCAAGAGAGATTCATCCAGCGCTGGGTTGATGCTTTATCTGATCCACGCGTCACCTATGAGATCCGCAGCATCTGGATCTCCTACTGGTCTCAGGCTGACAAGTCTCTGGGTCAGAAACTAGCATCTCGTCTCAACGTGAGGCCAAGCATTTGA 1479 0.4801 MDPYKYRPSSAYNSPFWTTNSGAPVWNNNSSLTVGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFETTHDISNLTCADFLRAPGVQTPVILRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRIVDFFSHHPESLHMFSFLFDDVGIPQDYRHMEGSGVNTYTLINKAGKAHYVKFHWKPTCGVKCLLEEEAIRVGGSNHSHATQDLYDSIAAGNYPEWKLFIQTIDPDHEDKFDFDPLDVTKTWPEDILPLQPVGRLVLNRNIDNFFAENEQLAFCPAIVVPGVYYSDDKLLQTRIFSYSDTQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDPVRHAERYPIPPAILTGRREKCIIPKENNFKQPGERYRSFAPDRQERFIQRWVDALSDPRVTYEIRSIWISYWSQADKSLGQKLASRLNVRPSI* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0102 492 PANTHER CATALASE 6 487 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi18g0102 492 ProSitePatterns Catalase proximal heme-ligand signature. 344 352 IPR002226 GO:0020037
Vvi18g0102 492 CDD catalase_clade_1 16 486 - -
Vvi18g0102 492 PRINTS Catalase signature 115 132 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi18g0102 492 PRINTS Catalase signature 31 54 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi18g0102 492 PRINTS Catalase signature 94 112 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi18g0102 492 PRINTS Catalase signature 299 326 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi18g0102 492 PRINTS Catalase signature 331 357 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi18g0102 492 PRINTS Catalase signature 134 152 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi18g0102 492 PIRSF Catalase_clade1-3 7 491 IPR024711 GO:0004096|GO:0006979|GO:0020037
Vvi18g0102 492 Gene3D Catalase core domain 16 491 - -
Vvi18g0102 492 ProSiteProfiles catalase family profile. 14 492 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vvi18g0102 492 SMART Catalase_2 18 401 IPR011614 GO:0004096|GO:0020037
Vvi18g0102 492 Pfam Catalase-related immune-responsive 424 486 IPR010582 -
Vvi18g0102 492 SUPERFAMILY Heme-dependent catalase-like 12 489 IPR020835 GO:0020037
Vvi18g0102 492 Pfam Catalase 18 398 IPR011614 GO:0004096|GO:0020037
Vvi18g0102 492 ProSitePatterns Catalase proximal active site signature. 54 70 IPR024708 GO:0004096
Vvi18g0102 492 FunFam Catalase 14 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0102 Vvi-Chr18 927547 931993 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0102 K03781 - vvi:100244516 1041.95