Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0098 ATGGCGATTCGTTTAGGGTTTCGCGTGCGGATTTCGCTGTTCCAGGTATTGTTTCTTGTATTTATAATAAGTGCAGAGAGGTCTGACACCCGATTTCTTTTGACATCCAATGCCTCAGCTGGGGAAAGACATTCTGAAGAATATTGTGCAATGTATGATATTTGTGGGAAGCGTAGTGATGGAAAAGTATTGAACTGTCCTTATGGTTCCCCATCTGTGAAGCCAGATGATCTGCTTTCATCAAAGATCCAAAGTATGTGTCCAACCATCAGTGGTAATGTTTGTTGTACAGAAGCTCAATTTGACACATTACGGACACAAGTCCAACAAGCAATTCCTTTTCTTGTAGGCTGTCCAGCATGCCTGAGGAATTTTTTGAATTTGTTCTGTGAGCTTACCTGCTCTCCCAATCAGAGTTTATTTATCAATGTGACTTCTGTTTCCAAGGTTAATAACAATTTGACTGTGGATGGGATTGAATTTATTATAACTGATGCTTTTGGTGAAGGGTTGTATAACTCTTGTAAGGATGTAAAGTTTGGTACAATGAATACTCGAGCAATTGACTTTATTGGTGCTGGAGCTAAAACTTTTAAAGAATGGTTTGCTTTTATTGGTACACGTGCAGCCCCCAGTGTGCCAGGTTCACCATATGCCATTAATTTCCAACCAAGTATTGCTGAGTCATCTGGGATGAAACCTATGAATGTATCCACATATTCATGTGGTGACAATTCACTGGGATGTTCTTGTGGTGATTGCCCTTCAGCTTCTGTCTGCTCTGGTTATGCTCCTCCTTCCCTACACAAAGAGGGTTCATGTTCAGTGAGAATTGGGTCCCTTAAGGCCAAATGCATTGAATTTTCTTTGGCAATCCTATATATCATACTGGTTACTATCTTTTTTGGATGGGGTTTGTTTCATCGAACTAGAGAAAGGAACCCAGCTCCTAGAATGAAACCAATGCTAAATGTCATGGATGGTAGTGAGCTCCATTCCATGAACAGGCCAAAGGATGAGAATCTCTCTTCACAGATGCTTGAGGATGTTCCCCAAATTAGAAATGGGGTTCAACTTTCAATTGTGCAAGGATACATGTCAAACTTTTACAGGAGATATGGAACATGGGTCGCTAGACATCCCACCATCATGTTGTGTTCGTCATTGGCTATAGTTCTTGTACTTTGTTTAGGTCTAATTCGTTTTAAGGTGGAGACACGACCTGAGAAGCTATGGGTGGGTCCTGGGAGTAAAGCTGCAGAAGAGAAACAATTTTTTGATAGCCACCTAGCTCCTTTTTACAGAATTGAACAGCTCGTATTAGCGACAATTCCAGATGCAAATGGCATATCACCAAGTATTGTGACAGAGAACAATATCAAGTTACTTTTTGAAATACAAAAGAAGGTTGATGGTCTTCGTGCAAATTTTTCTGGTTCTATGATATCTCTGACTGACATTTGCATGAAGCCACTTGGCCAGGATTGTGCCACTCAAAGTGTTCTACAGTATTTCAAAATGGATTCCAGAAATTATGATGATTATGGAGGAGTTCAACATGTTGAATATTGCTTTCAGCATTATACATCTGCAGATACATGTATGAGTGCATTTAAAGCACCACTAGATCCTAGCACTGCACTAGGGGGTTTCTCTGGGAATAATTATTCTGAGGCTTCTGCATTTATAGTAACGTATCCTGTGAATAATGCAATTGACAAAGAAGGCAATGAAACCGGGAAAGCAGTGGCTTGGGAAAAGGCCTTCATTCAGATAGTGAAGGATGATCTATTGCCAATGATGCAATCTAAAAATCTAACGCTTTCCTTTTCATCCGAAAGCTCAATTGAGGAGGAATTAAAAAGAGAAAGTACTGCAGATGCCATAACTATATCGATAAGCTATCTCGTTATGTTTGCTTACATATCTTTGACTTTGGGTGATACACCTCGTCTATCTTCTTTTTACATTTCATCCAAGATATTCCTTGGTCTTGCAGGAGTTATGCTTGTCATGCTCTCTGTTCTTGGATCAGTTGGATTCTTCAGTGCCATCGGAGTGAAATCTACACTAATCATTATGGAGGTCATTCCTTTTCTTGTTCTGGCCGTTGGTGTTGATAACATGTGTATACTGGTACATGCTGTTAAACGGCAACCATTGGAGTTGCCTTTGGAAGGACGAATAAGTAATGCACTTGTGGAAGTTGGACCATCCATAACACTTGCTAGTCTTGCTGAGGTTTTAGCATTTGCTGTTGGAACTTTTATTCCTATGCCAGCATGCCGTGTGTTCTCTATGTTTGCTGCATTGGCCGTTCTTTTGGACTTCCTTCTGCAAGTTACTGCATTTGTTGCATTAATCGTTTTTGATTTTTTGAGAGCTGAGGATAGAAGAATTGATTGTTTTCCCTGTATAAAAATTTCTTCATCATATGCTGATTCAGATAAAGGTATTGGTCAGAGAAAACCTGGACTGCTGGCACGATATATGAAGGAGGTCCATGCACCTATTCTCAGTCTTTGGGGAGTCAAATTAGTTGTCATTTCCGTCTTTGTGGCTTTTGCATTGGCTAGCATTGCATTATGTACAAGAATCGAACCTGGTTTGGAACAGAAGATTGTTCTTCCTCGGGACTCATATCTTCAGGGGTATTTCAATAATGTTTCAGAGTATCTCAGAATTGGACCACCTCTATATTTTGTTGTGAAGAACTATAATTATAGCTCAGAGTCAAGACATACAAATCAGTTGTGCTCCATCAGCCAATGTAATTCAGACTCTCTTTTAAACGAGATTGCAAGAGCATCCTTAATACCAGAATCAAGCTACATAGCTAAGCCAGCTGCTTCTTGGCTTGATGATTTTCTTGTATGGATATCACCAGAAGCTTTTGGTTGCTGTCGGAAGTTCACAAATGGGAGTTACTGTCCCCCTAATGATCAGCCTCCTTGCTGTGCTTCTGAAGATGGTTCTTGTTATCTGAATGGATTATGCAAGGATTGCACCACGTGTTTTCGTCACTCAGATCTGTATAATGATCGTCCATCTACGGCTCAATTTAGAGAGAAACTTCCATGGTTCCTTGCTGCTCTACCTTCTGCTGATTGTTCTAAAGGTGGACATGGGGCTTACACCAGCAGTGTGGAATTGAAAGGCTTTGAGAGTGGAATTATTCAAGCATCAAGTTTTCGTACATATCACACCCCCCTCAACAAGCAAATTGACTATGTTAATTCAATGAGGGCTGCACGAGAGTTCACGTCAAGGGTTTCTGATTCTTTGAAGATTCAGATCTTTCCTTATTCAGTGTTTTATATGTTTTTTGAGCAATACCTTGACATATGGAGGACAGCATTGATCAACCTTGCTATTGCTATTGGTGCGGTATTTATTGTCTGCTTAGTTATCACGTGCAGTTTATGGAGCTCAGCAATCATTTTACTAGTATTGGCAATGATCGTTGTGGATCTTATGGGAGTAATGGCAATTTTGAATATCCAACTGAATGCACTCTCTGTTGTGAACCTTGTAATGGCAGTGGGCATTGCTGTTGAGTTTTGTGTGCATATAACACATGCTTTCTCGGTAAGCAGTGGAGATAGAAACCAGCGCATGAAGGAGGCTTTGGGTACAATGGGTGCTTCTGTCTTCAGTGGGATTACACTCACAAAGCTAGTTGGAGTTATCGTTCTTTGCTTCTCCAGGACTGAAGTTTTTGTGGTGTATTACTTCCAAATGTACCTGGCCCTGGTCCTTCTTGGCTTTTTGCATGGGCTTGTATTTTTACCTGTTGTATTGAGCATGTGTGGTCCGCCTTCAAGATGTGTGTTAATAGACAAGCGAGAAGATCAGCCATCTCCATCATCACCGCTATAA 3879 0.4058 MAIRLGFRVRISLFQVLFLVFIISAERSDTRFLLTSNASAGERHSEEYCAMYDICGKRSDGKVLNCPYGSPSVKPDDLLSSKIQSMCPTISGNVCCTEAQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVNNNLTVDGIEFIITDAFGEGLYNSCKDVKFGTMNTRAIDFIGAGAKTFKEWFAFIGTRAAPSVPGSPYAINFQPSIAESSGMKPMNVSTYSCGDNSLGCSCGDCPSASVCSGYAPPSLHKEGSCSVRIGSLKAKCIEFSLAILYIILVTIFFGWGLFHRTRERNPAPRMKPMLNVMDGSELHSMNRPKDENLSSQMLEDVPQIRNGVQLSIVQGYMSNFYRRYGTWVARHPTIMLCSSLAIVLVLCLGLIRFKVETRPEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLVLATIPDANGISPSIVTENNIKLLFEIQKKVDGLRANFSGSMISLTDICMKPLGQDCATQSVLQYFKMDSRNYDDYGGVQHVEYCFQHYTSADTCMSAFKAPLDPSTALGGFSGNNYSEASAFIVTYPVNNAIDKEGNETGKAVAWEKAFIQIVKDDLLPMMQSKNLTLSFSSESSIEEELKRESTADAITISISYLVMFAYISLTLGDTPRLSSFYISSKIFLGLAGVMLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQPLELPLEGRISNALVEVGPSITLASLAEVLAFAVGTFIPMPACRVFSMFAALAVLLDFLLQVTAFVALIVFDFLRAEDRRIDCFPCIKISSSYADSDKGIGQRKPGLLARYMKEVHAPILSLWGVKLVVISVFVAFALASIALCTRIEPGLEQKIVLPRDSYLQGYFNNVSEYLRIGPPLYFVVKNYNYSSESRHTNQLCSISQCNSDSLLNEIARASLIPESSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPNDQPPCCASEDGSCYLNGLCKDCTTCFRHSDLYNDRPSTAQFREKLPWFLAALPSADCSKGGHGAYTSSVELKGFESGIIQASSFRTYHTPLNKQIDYVNSMRAAREFTSRVSDSLKIQIFPYSVFYMFFEQYLDIWRTALINLAIAIGAVFIVCLVITCSLWSSAIILLVLAMIVVDLMGVMAILNIQLNALSVVNLVMAVGIAVEFCVHITHAFSVSSGDRNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSMCGPPSRCVLIDKREDQPSPSSPL* 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0098 1292 NCBIfam Niemann-Pick C type protein family 49 1270 IPR004765 GO:0005319|GO:0016020
Vvi18g0098 1292 ProSiteProfiles Sterol-sensing domain (SSD) profile. 627 790 IPR000731 -
Vvi18g0098 1292 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 585 790 - -
Vvi18g0098 1292 FunFam NPC intracellular cholesterol transporter 1 584 801 - -
Vvi18g0098 1292 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 38 1277 - -
Vvi18g0098 1292 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1079 1271 - -
Vvi18g0098 1292 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1078 1275 - -
Vvi18g0098 1292 Gene3D Multidrug efflux transporter AcrB transmembrane domain 582 796 - -
Vvi18g0098 1292 Pfam Patched family 1059 1270 IPR003392 GO:0016020
Vvi18g0098 1292 Pfam Patched family 442 905 IPR003392 GO:0016020
Vvi18g0098 1292 Pfam Niemann-Pick C1 N terminus 47 280 IPR032190 -
Vvi18g0098 1292 FunFam NPC intracellular cholesterol transporter 1 1080 1275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0098 Vvi-Chr18 874340 900898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0098 43 1290 Miscellaneous Gene Families AT1G42470 75.741 0.0 1936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0098 K12385 - vvi:100242789 2528.82