Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0093 ATGGGAAAAGTAGCGGAGATGAAGAAGAAGAAGAAAGGACGCCCCTCTCTCTTAGATCTCCAAAAACGCAGTCTCATAGAACAAGAGCAACAGCCACAAAACCCTAACTTGAAAAACCCTAATTTTCCTAATCCAAATCCTAACTCAACACGTCGATCCACTCGCCGGAGCGCCAAAGTCGACGAAATTTTGCCGGCGCCAGACTGGATTGAAGGCGTCGGAGACGACGATGACGAGCGCAAAGAGAAGAAGCTTAAGCTCCTTCGCCGCTTGTCTCCGAATCATACGCAAAATCCTGGATCTTTGCCGAATTCCGTGTCTTTGCACTCGGTTTCGTACGCTTCAAATTCGAATGCGGATGTTGAGAATCCCGAGGCGTCTCTCAAGAAGCGGAAGATCAATGCCGTTGGTGACGGATCTGGCCACACCACTGCCGAAAAGGAAGAAAAGGTTGCGAAAGCGACTGATACTCCACAAGGGTCGAGGTTGGAATCCGGCCCCACGACACCTTTGCCAGACAAAAAGTTGTTGGTGTTCATTCTTGATAGACTTCAAAAAAAAGACACCCATGGTGTGTTCTTGGAGCCAGTGGATCCGGAAGAGCTTCCCGATTACCATGACATCATAGAGCATCCCATGGATTTTGGAACTGTGAGGAAGAAACTAGATGGGGGACTTTATTCCAACTTGGAACAATTTGAGAGCGATATTTTCTTAATATGTTCGAATGCAATGCAGTATAATGCACCAGATACTGTGTACTTTCGACAGGCACGAACGATACAAGAACTAGCAAAGAGGGACTTTGCAAATTTGAGGCAAGAAGGTGATGATGGCGAGCCACAACCCAAAATTGTCAGGAGAGGCAGGCCACCAACCAAGCACCTGAAGAAATCTCTTGGAAGTTCTCCCTTAGAGCATGTTGCACCTGAGACATCCTCTGAAGCGACTCTTGCTACTGGGGGAGATAATTCCATCTCATCTAACTCCTACAATCTAAGGAAAGGACCTACTCCATGCAAGTTTCGACCGGCAGACATATCAGTGAAGGCCCAATATGGGTCCCGCAACAGTGACAATTATTCTAGCTGGTTGTCTGAATGGAATAATGAATTTCCAGCTTCCATTTTGAAGGGAGTTTCCACGAAGCATGGCAAGAAACCTTTTGAATTAGATGAAAATAGGCGTGATACCTATAAGCATCCATTGGCTTCCAACCATGAGCCATCAGTGTTGACTACCCTCCATGGAGAATTGAAGCAACTGATGTCGGTAGGTCTACACTCGGACCATGGTTATGCAAGAAGCCTCGCTCGATTTGCTGCAGATCTTGGGCAAGATGTTTGGAAAATTGCTGCCAAGAAAATTGCCAATGTTTTGCCTGTTGGAGTTGAGTTTGGTCCTGGATGGGTGGGAGAAAATGAGGCATTAGCACAGCGGCCATCTCTGTTGTGTGAGAATCAGAAATCTTCAAACAACTCAACACCACCACATCCACAGCCCCCACCTACTACTTCTGGTTCAAGTCTGTTTGTTGCAAACAGATCATCTCTCCCTTGTAAAGAAGAGTCAGGGGAAGCTGTCAGAGGATTAAATTCCCAAATCGAGTTAACTTCAAGACCTGCTCCTCCTGAAATTCACCAAACGCTTGGAATTCACCCTGGTTTGAATGGTTTCAGTGGTGGGTTTGGGTTCAATCCTTCATCCCAAATGGGAATGGCCAGACTGGCCATGCTAGCAGGGAATTCCAGTACTGAATCAATGCCATCTCAAAAGCTTGGCATGGGATTACCACAACGGATTCCACCCGACCTCAATGTCAGATTCCAGGCACCAGGCTCACCCAGCTCCAGCACCACGCCCATTGCTTCATCACAACAGCCAGATTTAGCCTTGCAGCTGTGA 1905 0.4714 MGKVAEMKKKKKGRPSLLDLQKRSLIEQEQQPQNPNLKNPNFPNPNPNSTRRSTRRSAKVDEILPAPDWIEGVGDDDDERKEKKLKLLRRLSPNHTQNPGSLPNSVSLHSVSYASNSNADVENPEASLKKRKINAVGDGSGHTTAEKEEKVAKATDTPQGSRLESGPTTPLPDKKLLVFILDRLQKKDTHGVFLEPVDPEELPDYHDIIEHPMDFGTVRKKLDGGLYSNLEQFESDIFLICSNAMQYNAPDTVYFRQARTIQELAKRDFANLRQEGDDGEPQPKIVRRGRPPTKHLKKSLGSSPLEHVAPETSSEATLATGGDNSISSNSYNLRKGPTPCKFRPADISVKAQYGSRNSDNYSSWLSEWNNEFPASILKGVSTKHGKKPFELDENRRDTYKHPLASNHEPSVLTTLHGELKQLMSVGLHSDHGYARSLARFAADLGQDVWKIAAKKIANVLPVGVEFGPGWVGENEALAQRPSLLCENQKSSNNSTPPHPQPPPTTSGSSLFVANRSSLPCKEESGEAVRGLNSQIELTSRPAPPEIHQTLGIHPGLNGFSGGFGFNPSSQMGMARLAMLAGNSSTESMPSQKLGMGLPQRIPPDLNVRFQAPGSPSSSTTPIASSQQPDLALQL* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0093 634 MobiDBLite consensus disorder prediction 91 123 - -
Vvi18g0093 634 CDD Bromodomain 173 269 - -
Vvi18g0093 634 MobiDBLite consensus disorder prediction 272 287 - -
Vvi18g0093 634 MobiDBLite consensus disorder prediction 486 511 - -
Vvi18g0093 634 SMART bromo_6 166 274 IPR001487 GO:0005515
Vvi18g0093 634 MobiDBLite consensus disorder prediction 23 53 - -
Vvi18g0093 634 PANTHER BROMODOMAIN CONTAINING PROTEIN 7 633 - -
Vvi18g0093 634 ProSiteProfiles Bromodomain profile. 185 255 IPR001487 GO:0005515
Vvi18g0093 634 Gene3D - 139 283 IPR036427 GO:0005515
Vvi18g0093 634 MobiDBLite consensus disorder prediction 272 332 - -
Vvi18g0093 634 MobiDBLite consensus disorder prediction 606 634 - -
Vvi18g0093 634 Pfam Bromodomain 180 259 IPR001487 GO:0005515
Vvi18g0093 634 MobiDBLite consensus disorder prediction 124 155 - -
Vvi18g0093 634 SUPERFAMILY Bromodomain 157 276 IPR036427 GO:0005515
Vvi18g0093 634 MobiDBLite consensus disorder prediction 610 634 - -
Vvi18g0093 634 MobiDBLite consensus disorder prediction 306 332 - -
Vvi18g0093 634 ProSitePatterns Bromodomain signature. 190 247 IPR018359 -
Vvi18g0093 634 PRINTS Bromodomain signature 188 201 IPR001487 GO:0005515
Vvi18g0093 634 PRINTS Bromodomain signature 202 218 IPR001487 GO:0005515
Vvi18g0093 634 PRINTS Bromodomain signature 236 255 IPR001487 GO:0005515
Vvi18g0093 634 PRINTS Bromodomain signature 218 236 IPR001487 GO:0005515
Vvi18g0093 634 MobiDBLite consensus disorder prediction 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0093 Vvi-Chr18 821694 826998 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0093 K22184 - vvi:100244510 1087.4