Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0086 ATGGGCTCTGCAACTCCTGCGACAAACCCTAAAAATGTATATCACATCGGAGGAATCGCAGTGGAGTTTCCATACCAACCGTACGGATCGCAGCTAGCGTTCATGGGGCGAGTCATCTCAACCCTAGATCGAGCCCAGAGAGACGGCCACTGTCACGCGTTGCTCGAGTCTCCGACCGGCACTGGAAAGTCACTTTCGCTTCTTTGCTCAGCGCTCGCTTGGCAAAAGAACTATCGGCCGAAGAATATGAACGGCGATGTTTCTAATTCGAAGCCTGATCCAGAGGCGTTGTCGGATCCGCTTGGACATGGCGGTGGATTTGTTCCAGAAACTGAGCCTTCGACACCAGAGAATTCAGAGCCAGCTTCGGCTGCGAATGGCAAAAATAAAAAGAAAAAGAGAAAGCCTACCATATTTTATGCATCGAGGACACACACACAAATCTCTCAAGTGATCCGTGAATACAGGAAAACAGCATATCGTGTGCCAATGGCAGTTTTGGCATCACGGAAACATTACTGCACAAACAGAAAAATAAATGCAAAAGCAAATATTGATGAAGAATGTAAGCTGCTTGTGAGGGACCAAGATTTTGGATGCCCAGAATTCAAAAATATGCATAAAGTCAAAGGTCATCCATCCCTTCAGAAAGGAGGCTGCCATGAGGCCCATGATATTGAAGATCTTGTGAAAGTTGGACAAGTTGTAAAAGGTTGTGCATATTATGCTGCACGAGATATGGCAGATAATGCACAATTAGTTTTCTGCCCATACAGCTACATCATTAATCCAGTCATTCGGGGAGCAATGGAGCTCGACATCGAAGGAGCCATTTTGATTCTTGATGAAGCCCATAATATAGAGGACATGGCTCGTGATGCTGGTAGTGTGGATGTTGAAGAGGATGTTCTACATAAACTGCAGACAGAACTAGGGCAACTCTGTCCAGCTGATGCAATGATTTACCAACCTTTATATGAAATGACACAGGACATCATAAGTTGGATTGACCGGAAGAAAAATACCTTAGAAAAACGTGAATTCCAGCATTATTTCTCATGTTGGACTGGTGATAAGGCTTTAAGGGAGCTGCAAGAAGCTAATATTTCTCAGCAGAGCTTTCCAATCTTGCAAGAATGTGCCAGAAAGGCAATCAAAGCTGCTATAGATATAGAGTCAAGGGTAGCTCATTTGAGTGGCATGTCAGTGATTACACTGGAAGGGTTGTATTCTGCACTGAGTTACTTCTTTTCTGAAAATGGGCTTCACACTGTTGATTACCAGCTTGCTTTACAACGATATGTTAAAAAAGATGCTGGGCATCACTTATCTGTCAGATTACATTTAATCAAATTAATGCTAGTAGAATTTATCCAAAACTGGACATGTACTTTTAGTTTGTGGTGCTTGAATCCTGCTGTTGTCTTCCGAGGCATTGCTGATCTTTCTTTGTCAGTAATCCTGACATCTGGGACCCTTTCACCAATGCACTCATTTTCATCTGAACTTGGAGTTCAGTTTGGAACATGTCTGGAGGCTCCGCATGTAATAGATATTGAATCACAGCTGTGGGCTGCCATATTCTCCACTAGTCCAGGTAATTATCCGTTGAATGCAAGTTATAAAACAGCTGATGCATATGCGTTCCAGGATGCACTTGGAAAATCTTTGGAGGAAATTTTCAAGATCGTCCCGGGTGGCACTCTTGTGTTCTTCCCTAGTTATAAGCTTATGGAGAAGCTGTGTAGTCGATGGCGTGAAACAGGTCAATGGTCTCAACTAAATGAACAGAAATTTCTTTTTATTGAGCCAAGAGGAGGAAGTCAAGATGATTTTGAGCCTATTTTGAAGGCTTATTATGAGTCAGTTCGTCGAGGAACCAAGCCTACTCTTGGGAGAAAGAGAAGAACTAAGAAAATGGATCTTAGTCAGTCTGATGAAAAGGAGTCCCAAGATAATTCTAAGAAGAAAGGAGCTGCCTTTCTTGCAGTTTTCCGAGGAAAGGTTTCAGAAGGAATTGACTTTTCTGATGAAAATGCTCGAGCTGTTATCATCGTTGGCATACCCTTTCCAAACGTCCATGATATTCAAGTTGCACAGAAGAAGAAATACAACGACATGTATAAATCATCCAAAGATCTCTTGAGTGGGAATGAATGGTACTGCCACCAAGCCTTTCGAGCCCTAAATCAGGCTGCAGGCCGTTGCATACGACATAGGTTTGACTATGGTGGCATCATCTTATTAGCAGATGAGCGTTTTCGAGAAGATAGAAATACAGCATACATTTCAAAGTGGCTAAGGAAATCCATTAAACAGTATGAGAGCTTCGACATGTCACTAGAGAGATTAAAATCCTTTTTCATAGATGCCAAGGAACAGGTTGGAGACAAGGCTGTGAATGTATTACAGAGTGCTGAAACTAATGTGCAAGAAATCCTTTCTATGGATCAGATCATTGGGTCCACCAGAAAGAAAAATCAGAAGTTGAAAAAGCCTGACCATGGTGTACAAAAAGTAGTTTCAAACAATACAAGGGTTACAAAAAGAACTGCTCGGATATGTTATTCTCCAACTACAGAGTATAATACCTTTTTTCACCAACAAAGATCTCCAGGCAATACTAAGTTTCAAAAATTGGTGCTAAAGGATGAGGAGGGTTTCAGCAGCTGCAAAGAATATATTGACCTAGAATGCAGTCCTCAGAAAGACTCAAGGTGTTCCAAGGCTACATCTCCAGCATCCTCCCATGACGGTCCAGAAGTATCCATTGTCAAAGAAACCCCTGGTGTGGATGGTAATATCACTCAAACTAGTCCGGTGTCCTTCTCCAAGGATGAAAACTCCAGTTCAACCATAATCCAGGCCTCTACTGACTTGCCAGACCAATCATTATTCCATTCAATGTCCTACACTAATTCTAGTGGACCTCCTTCCAGAGCCATGTGTTCATTGCTGGTCACTCCTGAAAGAGACTTCATTGCAAACACCTCTAACATGATGCCAGAAACAGAATCACCTTTGAATTTGAGTGTAAATTCCCATGCCCAGAAAAGAAGAAAGTCAATGATATTGCCATCAGTTAACCCTACCCAAGCAGAGCACTCAGATGCTCCTGATGCCAAAACACCTGGCCATATAGGAAACTCCATGGCAACTAGAGATGCAAATCGTAGAATTGAATTTGGTTTTGGGTCAAAATTTTCAGAAGACAAATTGAAGAAGTCAAACATTCGTCAGCTGCTCACTATGAATCATTGTGATGCGTCGTCTGTGTCATCATGTTGCAGTATGGACAAGCAACTACAAATTTTTTGCTCACTCTGCAGAAATCCATTGGGTCTTCCTGAGAACGATTTGTATGTTATGTGTTCATTAACTTCATCATCAAAAGTTCATTTGGCATCACTTCTGAGAGGAAGCTTAGAATCTTTAGCTGTCAATACATCAACAAGCATTCCTGTGGTGGTGTCTGACAGTTCATCAGTTAATCAGCGCCTCTGCAATAAAACCCTTGGAGGTGCTCAAGAACATGGTGTTTGGTGTGAAGAAGATGGGTGTGTTTTCAACACCATCTACTGCCCCTTCTGCAGTACACCCAACAATTGTCTTGGTGTGCAGATAATGGCCACTAATGCGTCAAATGTTGATTTACTTAACAAGATTTTGTTTTACTTTGATAGATTGGAAATTAAGAATCCTGAGGCTTCAACGGACAAGGGAATTAAGAATCCTGAGTCATCGGAGGACAAGGATTTATCACCTCCTAGTGGCTCCAACAGTGATGAAGTTTCAGAACTGGATCCTTTTGAAAAATTTTCATACAAGCATCAAGAGCCTCAGCAGAACTCCAATGGCTGGAGGACTACAAAATCAAAGGTAGAATTTAAAATTGTCACTAGTCTAAATTTTTAG 3915 0.4184 MGSATPATNPKNVYHIGGIAVEFPYQPYGSQLAFMGRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSALAWQKNYRPKNMNGDVSNSKPDPEALSDPLGHGGGFVPETEPSTPENSEPASAANGKNKKKKRKPTIFYASRTHTQISQVIREYRKTAYRVPMAVLASRKHYCTNRKINAKANIDEECKLLVRDQDFGCPEFKNMHKVKGHPSLQKGGCHEAHDIEDLVKVGQVVKGCAYYAARDMADNAQLVFCPYSYIINPVIRGAMELDIEGAILILDEAHNIEDMARDAGSVDVEEDVLHKLQTELGQLCPADAMIYQPLYEMTQDIISWIDRKKNTLEKREFQHYFSCWTGDKALRELQEANISQQSFPILQECARKAIKAAIDIESRVAHLSGMSVITLEGLYSALSYFFSENGLHTVDYQLALQRYVKKDAGHHLSVRLHLIKLMLVEFIQNWTCTFSLWCLNPAVVFRGIADLSLSVILTSGTLSPMHSFSSELGVQFGTCLEAPHVIDIESQLWAAIFSTSPGNYPLNASYKTADAYAFQDALGKSLEEIFKIVPGGTLVFFPSYKLMEKLCSRWRETGQWSQLNEQKFLFIEPRGGSQDDFEPILKAYYESVRRGTKPTLGRKRRTKKMDLSQSDEKESQDNSKKKGAAFLAVFRGKVSEGIDFSDENARAVIIVGIPFPNVHDIQVAQKKKYNDMYKSSKDLLSGNEWYCHQAFRALNQAAGRCIRHRFDYGGIILLADERFREDRNTAYISKWLRKSIKQYESFDMSLERLKSFFIDAKEQVGDKAVNVLQSAETNVQEILSMDQIIGSTRKKNQKLKKPDHGVQKVVSNNTRVTKRTARICYSPTTEYNTFFHQQRSPGNTKFQKLVLKDEEGFSSCKEYIDLECSPQKDSRCSKATSPASSHDGPEVSIVKETPGVDGNITQTSPVSFSKDENSSSTIIQASTDLPDQSLFHSMSYTNSSGPPSRAMCSLLVTPERDFIANTSNMMPETESPLNLSVNSHAQKRRKSMILPSVNPTQAEHSDAPDAKTPGHIGNSMATRDANRRIEFGFGSKFSEDKLKKSNIRQLLTMNHCDASSVSSCCSMDKQLQIFCSLCRNPLGLPENDLYVMCSLTSSSKVHLASLLRGSLESLAVNTSTSIPVVVSDSSSVNQRLCNKTLGGAQEHGVWCEEDGCVFNTIYCPFCSTPNNCLGVQIMATNASNVDLLNKILFYFDRLEIKNPEASTDKGIKNPESSEDKDLSPPSGSNSDEVSELDPFEKFSYKHQEPQQNSNGWRTTKSKVEFKIVTSLNF* 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0086 1304 Gene3D - 26 340 IPR027417 -
Vvi18g0086 1304 MobiDBLite consensus disorder prediction 1236 1250 - -
Vvi18g0086 1304 MobiDBLite consensus disorder prediction 1030 1051 - -
Vvi18g0086 1304 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 16 788 IPR045028 -
Vvi18g0086 1304 SMART deadxpd 19 319 IPR006554 GO:0003678|GO:0016818
Vvi18g0086 1304 Pfam Helicase C-terminal domain 557 769 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vvi18g0086 1304 MobiDBLite consensus disorder prediction 1236 1265 - -
Vvi18g0086 1304 Gene3D - 534 782 IPR027417 -
Vvi18g0086 1304 MobiDBLite consensus disorder prediction 83 137 - -
Vvi18g0086 1304 FunFam Fanconi anemia group J protein homolog 534 782 - -
Vvi18g0086 1304 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 17 354 IPR014013 GO:0005524
Vvi18g0086 1304 MobiDBLite consensus disorder prediction 1270 1289 - -
Vvi18g0086 1304 MobiDBLite consensus disorder prediction 904 918 - -
Vvi18g0086 1304 FunFam Fanconi anemia group J protein-like isoform E 127 336 - -
Vvi18g0086 1304 MobiDBLite consensus disorder prediction 903 948 - -
Vvi18g0086 1304 MobiDBLite consensus disorder prediction 627 654 - -
Vvi18g0086 1304 SMART Cxpdneu3 575 756 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vvi18g0086 1304 CDD SF2_C_XPD 521 754 - -
Vvi18g0086 1304 SMART ultradead3 18 349 IPR014001 -
Vvi18g0086 1304 MobiDBLite consensus disorder prediction 636 654 - -
Vvi18g0086 1304 MobiDBLite consensus disorder prediction 930 948 - -
Vvi18g0086 1304 Pfam DEAD_2 140 303 IPR010614 GO:0003677|GO:0003678|GO:0005524
Vvi18g0086 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 752 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0086 Vvi-Chr18 767918 779528 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0086 K15362 - vvi:100251396 2519.19