Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0085 ATGGACGAACCAACGGACAATCAGATCAAAAGGCCATCAAATTTTAACGAACGCGATGTCCTTTATCAACTCTCTGGTCTGTTACCAATCTGCTGTAACACTTCAATTTCCAAACCATTCACAGAGAATTCACCCAAGGAACAATTAAAAACTAGGGCAGTTGATGGGTTTTTATCGCCCGGAGAGAAACTACGAGGGGTTTTTATTCAGAGACTCAGGGGTAAAGCTGCAATTGAGCTTGCCCTAACTAATGTAGGAATCGATTTAACTATTGATATTGTTTCAGAAGTAATTAATAGAGGGAATTTAGGGGGTGAAGCAATGGTTATCTTTTTTAATTGGGCGGTTAAACAGCCCACAATACCTAAAGATGTAGATACTTACAATGTAATTATTAAAGCCCTGGGGAGAAGAAAGTTCATTGAATTTGTAGTGAAGGTGTTGAAGGATATGCATATTCAAGGAATAAGCCCTAATTATGAAACACTATCTATTGTGATGGATAGCTTTATTAAGGCTCGCCAGGTCTCCAAAGCAATTGAAATGTTCAGAAATTTAGAAGAGTTCGGAGGGAAATGTGATACGGAATCTTTGAATGTGCTTTTACAATGTCTATGTCAGCGATCCCATGTGGGTGCTGCAAATTTGTTCTTTAATGCAATGAAGGGTGGGATACCATTTAACTGTATGACATACAATATTATTATTGGTGGGTGGTCAAAATATGGAAAAATTGGTGAAATGGAGAGGTGTTTGAAAGCAATGGTAGCAGACGGGTTTAGTCCCAATTGTTTGACTTTCAGTCACCTTATTGAAGGTTTGGGAAGAGCTGGTAGGATTGATGACGCAGTTGAGGTTTTTCATCATATGGAAGAGACAGGCTGTGTGCCCAATGCTTGTGTTTACAATGCATTGATTTCTAATTTTATTTCTACCAGAGATTTTGATGAATGTTTGAAATATTATAATTTTATGGTGAGTAGCAACTGTGACCCAAATATGGATACTTATACCAAATTGATCGTCGCTTTTCTTAAAGCCCGAAAAGTGGCAGATGCACTTGAAATGCTTGATGAGATGGTAGGTCGAGGAATGATTCCAACTACAGGTGCTATAACCTCTTTTATTGAACCTTTGTGTCAATATGGTCCACCCCATGCTGCTATGATGATTTATAAGAAGGCAAGAAAAGTTGGATGTAGAATATCTCTCAGTGCTTATAAGCTATTGCTCATGCGACTTTCCAGATTTGGCAAATGTGGAATGTTGTTGAATTTGTGGGATGAGATGCAAGAAAGTGGTTATTCTTCTGATACAGAAGTTTATGAGTATGTCATTAATGGGCTCTGCAACATAGGACAGCTTGACACTGCCGTACTTGTCATGGAGGAGTCTTTGCATAAGGGTTTTTGCCCAAGTAGGCTTATTCGTAGCAAACTGAATAACAAACTACTGGCTTCAAATAAAGTAGAGATGGCTTACAAGCTTTTTTTGAAGATCAAAATTGCTCGTCAGAATGACAATGCACGAAGATTTTGGCGTGGTAATGGGTGGCATTTTTGA 1563 0.3845 MDEPTDNQIKRPSNFNERDVLYQLSGLLPICCNTSISKPFTENSPKEQLKTRAVDGFLSPGEKLRGVFIQRLRGKAAIELALTNVGIDLTIDIVSEVINRGNLGGEAMVIFFNWAVKQPTIPKDVDTYNVIIKALGRRKFIEFVVKVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTESLNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIEPLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESGYSSDTEVYEYVINGLCNIGQLDTAVLVMEESLHKGFCPSRLIRSKLNNKLLASNKVEMAYKLFLKIKIARQNDNARRFWRGNGWHF* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0085 520 Gene3D Tetratricopeptide repeat domain 313 413 IPR011990 GO:0005515
Vvi18g0085 520 Gene3D Tetratricopeptide repeat domain 210 312 IPR011990 GO:0005515
Vvi18g0085 520 Gene3D Tetratricopeptide repeat domain 88 209 IPR011990 GO:0005515
Vvi18g0085 520 Gene3D Tetratricopeptide repeat domain 414 506 IPR011990 GO:0005515
Vvi18g0085 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Vvi18g0085 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Vvi18g0085 520 PANTHER ATPASE EXPRESSION PROTEIN 3 120 419 - -
Vvi18g0085 520 Pfam PPR repeat 443 470 IPR002885 -
Vvi18g0085 520 Pfam PPR repeat 127 155 IPR002885 -
Vvi18g0085 520 Pfam PPR repeat 162 190 IPR002885 -
Vvi18g0085 520 Pfam PPR repeat 406 434 IPR002885 -
Vvi18g0085 520 Pfam PPR repeat 336 364 IPR002885 -
Vvi18g0085 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Vvi18g0085 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Vvi18g0085 520 Pfam Pentatricopeptide repeat domain 252 308 IPR002885 -
Vvi18g0085 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Vvi18g0085 520 NCBIfam pentatricopeptide repeat 162 194 IPR002885 -
Vvi18g0085 520 NCBIfam pentatricopeptide repeat 441 473 IPR002885 -
Vvi18g0085 520 NCBIfam pentatricopeptide repeat 266 299 IPR002885 -
Vvi18g0085 520 NCBIfam pentatricopeptide repeat 336 368 IPR002885 -
Vvi18g0085 520 NCBIfam pentatricopeptide repeat 301 333 IPR002885 -
Vvi18g0085 520 NCBIfam pentatricopeptide repeat 127 159 IPR002885 -
Vvi18g0085 520 NCBIfam pentatricopeptide repeat 231 264 IPR002885 -
Vvi18g0085 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0085 Vvi-Chr18 764518 766080 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0085 124 501 Glycosyltransferase AT1G05670 23.741 1.46e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0085 - - qsu:111996365 764.222