Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0083 ATGGAGCTGTTTGATGCGTATTTTAGAAGAGCGGATTTGGATGGGGATGGGAGGATCAGTGGAGCTGAAGCCGTTGCGTTCTTTCAAGGATCCAATTTGGCCAAACATGTTCTGGCTCAGGTGTGGATGCATGCTGATCCGGCGGGCACTGGTTTCCTTGGTCGGGCAGAATTTTATAATGCTCTTAAACTTGTAACTGTGGCACAGAGTAAGCGAGAATTAACACCAGATATTGTGAAGGCGGCATTATATGGTCCAGCTGCAGCTAAAATTCCTGCACCACAAATAAATCTTGCTGCAATACCTTCACCTCAACCAAATCAGATGACTACTACACCAGCCCCACAAATGGGTGCAGTTGCACCAACAGCATCTCAAAATCTTGGCTTCCGAGGACAAACACTTCCAAATCCTAGCACAAACCAACAATATTTTCCTTCTCAGCAAAATCAGTTTATGAGACCGCCTCAACCCATGCCTGCTGGAAGCGCTTCACGTCCACCACAGAATCTTGCAGGGCCAGAACTTAACAGGGGAGGTAATATGGTTGGTCCTGGGGTGCCAAACTCAAACATTTCAAGTGATTGGCTCAGTGGAAGAACTGCTGGAGCTCCAACTGGGCCACTGTCACAGGTCCCTAATAGAGGGATAACTCCATCAATGCCCCCACCTACAACAAAACCACTAGATCTGGCTTCAACTCCTAAAGCACCAGTTGTTTCTGGGAATGGGTTTGCTTCTGACCCAGTTTTTGGTGGTAATGTGTTCTCTGCAACCCCAACTCAACAAAAAAGAGATTCTTCTGGGTTGACTTATTCTGTTAGTAGCTCACCTGCCTCATCAGTTGCTTTAAGTCCAGCACCTACTGGGTCCCCGTCCCTCTCCAAGCCTAGTTCACTGGACTCATTGCAGAGTGCTTTCACCATGGGACCTGCAGGTGGTCAGATTCAGCGTGCCCAGTCAGCAGGGAACCTAAACCAGCCTGCTCCTCCCCAGAGTACTTCTCCTCTTTCATCATCTGGGGTTTCAGTGGGAGTTGGAAATTCTGCTTCAAACCAGTCCCAGCTTCCATGGCCAAGGATGACACCATCCGATGTTCAGAAATACACAAAAGTGTTCATTGAAGTAGACTCGGACCGAGATGGCAAAATCACTGGCGAGCAAGCACGGAACCTATTTTTGAGTTGGAGGCTGCCAAGAGAGGTTTTGAAGCAGGTGTGGGACTTATCTGATCAAGATAGTGATAGCATGCTTTCTCTGCGGGAATTCTGCACTGCACTCTATCTTATGGAGCGATATAGGGAAGGTCGGCCTCTTCCAGCAGTGCTTCCAAGCAATATTTTGTTTGATGAGACATTGTTCCCTATGATGGGCCAACAAGCTTCTTTTGGAAATGCGGCTCGGCCACCTACTCCTGGTTTGTCTCATCAACATGGGATTCCTGGTGTCCGACAAATGACAACTGCACCTGGTTTGGGGCCACCTATTCAGGTTGCACTTCAGGGTGATGGAGCAATGCAACCTAATCAGCAAAAAATAAGTGGACTGGTTTCAGAGGATGTCTTTGGGAACCAACTCAGTAATGGAGGGAAAAATGGACTCAACTTGACACATCAAGATGTAACAGATTCAGAGAAAAAGGTTGAAGCAACAGAAAATGTGATTCTGGATTCTAAAGAGAAAATTGAGTTGTACCGCACAAAAATGCAGGAACTTGTTCTATATAAAAGCAGATGTGATAATCGACTTAATGAAATCACAGAAAGGGCATCTTCAGATAAGCGGGAGGCTGAGTTTGTGACTAAGAAATATGAAGAGAAGTATAAGCAAGTTGCAGAGATAGCATCTAAACTAGCAATGGAAGATGCCAGATTTCGTGATCTTCAGGGAAGGAAGAACGAGTTGCATCAAGCAATTATCAAAATGGAACAGGGTGGCAGTGCTGATGGTATTCTTCAGGTTCGAGCTGATCGCATACAGTCAGATCTTGAAGAGCTAATCAAGGCTTTGACAGATCGTTGCAAGAAACATGGATTAGATGTTAAGTCAACTGCAATAATTGAGCTTCCCATTGGTTGGGAACCTGGATTTCAAGAGGGAGCTGCTATTTGGGATGAAGATTGGGATAAGTTTGAAGATGAAGGACTTTCGTTTGCCAAAGATTGCGCTATTGATGTGCAAAATGGAGTAGGCTCTCCTAAATCAAAATCCACATCTATTCAGAAAGATAATGCTTCGAGTTTCGGTGAACATGGCATTGAGAATGAATCTGCATATACCCACAGTGAAGATGACTTGGCTAGAAGCCCACCTGGCAGTCCAGGTGGCAGGACTTCACTAGAAAGTCCATCTCAAGAACTTTCAAACAACCATTTCAGAAAGAGCAGTGAAGCAGACACTGAAATCCATAGAAGCTTTGATGAACCAAACTGGGAACCATCCTTTGACCACAATGACGACACAGACTCCATTTGGGGCTTTAACCCCAGTACAACCAAGGTGAGCCAAAATTTCCAGGACTTTGATTCTGATAAGCACAGGGAAAATGATATCTTTGGATCCGGCAACTTGGGAATAAATCCAATAAGAACCGAATCCCCACATGATGACCCATTCCAGAGAAAGAGTCCATTCAGCTTTGAGGATTCTGTTCCTAGTACTCCACTCTCCAAGTTTGGCAACTCCCCGCGGTACAGCGAGTGGGCAGGAGAGCACCACTTTGATATGAGCTCAAGGTTTGACTCCTTCAGCATGCACGATGGTGGATTTTCTCCCCCACGGGAAACTCTCACGAGATTTGACTCCATAAGCAGCAGCAGAGACTTTGGCCATGGTCAGGCAAGGTTCGATTCCTTAAACAGCGGCAGAGACTTTGGCCCTGGTCACGCAAGGTTCGACTCCATAAGCAGCAGCAGAGGCTTCGACCATGGTCAGACCTACTCTTTTGATGACTCAGATCCGTTCGGTTCAACTGGTCCATTTAAGGTCTCATCGGACAGTCAAACTCCAAGGAAAGGTTCTGATAATTGGGGTTTCTAG 3039 0.461 MELFDAYFRRADLDGDGRISGAEAVAFFQGSNLAKHVLAQVWMHADPAGTGFLGRAEFYNALKLVTVAQSKRELTPDIVKAALYGPAAAKIPAPQINLAAIPSPQPNQMTTTPAPQMGAVAPTASQNLGFRGQTLPNPSTNQQYFPSQQNQFMRPPQPMPAGSASRPPQNLAGPELNRGGNMVGPGVPNSNISSDWLSGRTAGAPTGPLSQVPNRGITPSMPPPTTKPLDLASTPKAPVVSGNGFASDPVFGGNVFSATPTQQKRDSSGLTYSVSSSPASSVALSPAPTGSPSLSKPSSLDSLQSAFTMGPAGGQIQRAQSAGNLNQPAPPQSTSPLSSSGVSVGVGNSASNQSQLPWPRMTPSDVQKYTKVFIEVDSDRDGKITGEQARNLFLSWRLPREVLKQVWDLSDQDSDSMLSLREFCTALYLMERYREGRPLPAVLPSNILFDETLFPMMGQQASFGNAARPPTPGLSHQHGIPGVRQMTTAPGLGPPIQVALQGDGAMQPNQQKISGLVSEDVFGNQLSNGGKNGLNLTHQDVTDSEKKVEATENVILDSKEKIELYRTKMQELVLYKSRCDNRLNEITERASSDKREAEFVTKKYEEKYKQVAEIASKLAMEDARFRDLQGRKNELHQAIIKMEQGGSADGILQVRADRIQSDLEELIKALTDRCKKHGLDVKSTAIIELPIGWEPGFQEGAAIWDEDWDKFEDEGLSFAKDCAIDVQNGVGSPKSKSTSIQKDNASSFGEHGIENESAYTHSEDDLARSPPGSPGGRTSLESPSQELSNNHFRKSSEADTEIHRSFDEPNWEPSFDHNDDTDSIWGFNPSTTKVSQNFQDFDSDKHRENDIFGSGNLGINPIRTESPHDDPFQRKSPFSFEDSVPSTPLSKFGNSPRYSEWAGEHHFDMSSRFDSFSMHDGGFSPPRETLTRFDSISSSRDFGHGQARFDSLNSGRDFGPGHARFDSISSSRGFDHGQTYSFDDSDPFGSTGPFKVSSDSQTPRKGSDNWGF* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0083 1012 SUPERFAMILY EF-hand 2 83 IPR011992 -
Vvi18g0083 1012 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509
Vvi18g0083 1012 CDD EH 369 435 IPR000261 GO:0005515
Vvi18g0083 1012 MobiDBLite consensus disorder prediction 131 156 - -
Vvi18g0083 1012 MobiDBLite consensus disorder prediction 879 894 - -
Vvi18g0083 1012 Pfam Cytoskeletal-regulatory complex EF hand 359 430 IPR000261 GO:0005515
Vvi18g0083 1012 MobiDBLite consensus disorder prediction 792 819 - -
Vvi18g0083 1012 MobiDBLite consensus disorder prediction 947 1012 - -
Vvi18g0083 1012 MobiDBLite consensus disorder prediction 730 753 - -
Vvi18g0083 1012 Gene3D - 1 90 - -
Vvi18g0083 1012 MobiDBLite consensus disorder prediction 971 1012 - -
Vvi18g0083 1012 MobiDBLite consensus disorder prediction 256 362 - -
Vvi18g0083 1012 SMART eh_3 357 453 IPR000261 GO:0005515
Vvi18g0083 1012 SMART eh_3 4 88 IPR000261 GO:0005515
Vvi18g0083 1012 MobiDBLite consensus disorder prediction 184 216 - -
Vvi18g0083 1012 MobiDBLite consensus disorder prediction 729 831 - -
Vvi18g0083 1012 CDD EH 4 70 IPR000261 GO:0005515
Vvi18g0083 1012 SUPERFAMILY EF-hand 355 447 IPR011992 -
Vvi18g0083 1012 SMART efh_1 3 31 IPR002048 GO:0005509
Vvi18g0083 1012 SMART efh_1 37 65 IPR002048 GO:0005509
Vvi18g0083 1012 SMART efh_1 368 396 IPR002048 GO:0005509
Vvi18g0083 1012 SMART efh_1 402 430 IPR002048 GO:0005509
Vvi18g0083 1012 MobiDBLite consensus disorder prediction 775 791 - -
Vvi18g0083 1012 MobiDBLite consensus disorder prediction 256 361 - -
Vvi18g0083 1012 Gene3D - 360 448 - -
Vvi18g0083 1012 ProSiteProfiles EH domain profile. 365 448 IPR000261 GO:0005515
Vvi18g0083 1012 MobiDBLite consensus disorder prediction 131 236 - -
Vvi18g0083 1012 ProSiteProfiles EH domain profile. 1 90 IPR000261 GO:0005515
Vvi18g0083 1012 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Vvi18g0083 1012 PANTHER EH DOMAIN 1 935 - -
Vvi18g0083 1012 MobiDBLite consensus disorder prediction 844 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0083 Vvi-Chr18 750236 760004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0083 1 1010 EF-hand Containing Proteins AT1G20760 49.771 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0083 K12472 - vvi:100240982 1955.64