Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0079 ATGATATCTGAAAGACTGTCAGGAGAGACATCTCTTCGTCGGGATTTGGAGGCTTTGAGTGTGTCCCAACGTCTTGTGAGAAGTGTTAGCCAGAAGTTGAGGAAGAAGAACAACAGAAGTGAAGGGGAAGAAGAGGAAGATGGCAGGGGGGTTTCTTTGAGATGTCTTGTTTTGTATGGTAGAGGTGGGGGTTGCAAAGTAGGAGCTGAAACAAGCGATGACTTTGGGGATCCCAGTAGTAGAAGGAGGTCAAGTGCCAGTGATGACGGGAAAGGGTACAAAACAATATGTGGAGTGGAGGAAACTGGAGTGGATTGCTTCTCATATGGGGTAAAGGATAAGTTTTGGAAGAGGAATAACAGGAAGGATTTAGAGGTTGAAGAACTACAGCAAAACAGTAGAATGCACCTCTTCCTTCCAGATGACATTCTGGAATTGTGCTTGGTGCGGCTCCCACTGACCAGTCTCATGAATGCCCGCCTTGTATGCAAGAAATGGAGATACTTGACTACAACTCCAAGGTTTATGCAGATGAGAAAGGAAGGTTTGCATCAGAATCCATGGTTGTTTCTGTTTGGTGCTGTGAAAGATGGTTATTGCTCTGGGGAGATTCATGCCTTAGACGTGTCTCTTGATGAATGGCATAGAGTTGATGCTGATATTCTCAAAGGAAGGTTCCTTTTCTCTGTGGCCAGTATCCAGGATAGTGTTTATATAGTTGGAGGTTGTTCTAGCTTGACCAGCTTTGGGAGGGTGGATAGGAGCTCATTCAAGACGCACAAAGGGGTTTTGGTATTTAGCGCCCTGACTAAATCCTGGCGTAAAGTTGCATCCATGAAGCATGCTAGATCATCGCCCATTTTAGGAATTTCTGAGGTTGGTTCAGACTGTTTGATTGTGCGAAGTCAGCAAAACAGGCAAGATAGACGCTTTCCCAGGACACGGATTGGTGGGGTATCAGATGTTTATGAGGATCCTCACAGGCTTTCACTAAGGCGTGAGCCTGGCAGTGGTTTCAATGAAAACGAGATTTCATCATTGCCCCATAGAAAGCAGGGCAAGTTTGTCAGGCAGAAAGGTGACCTCTCAAACACTACTGACTGTAGAAGGTTTGTGCTGATTGCCGTCGGAGGTCTTGGCTCTTGGGATGAGCCTTTGGATTCTGGTGAAATCTATGATTCTGTATCAAATAAATGGATGGAAATTCAAAGGTTGCCTGTAGACTTTGGGATTGTTTGTTCTGGGGTTGTTTGTAATGGGATGTTTTACGTTTATTCTGAGACTGATAAGCTTGCTGGATATGACATAGAAAGGGGTTTTTGGGTTGGAATCCAAATCACTCCCTCTCCTCCTCGTGTCCATGAATACTACCCAAAACTCGTGTCTTGTAATGGCCGGCTGTTCATGCTTTCTGTTTCCTGGTGTGAAGGGGATGGTCAAATAGGGAGACGAAACAAAGCTGTTAGAAAGTTGTGGGAGCTGGATCTCATGTATCTTACCTGGACTGAGGTCTCAATCCATCCTGATGCTCCCATGGACTGGAATGCTGCATTTGTAGCAGATAGAAACCTCATATTTGGGGTTGAGATGTTCAAGATATTTGGTCAGGTGTTGGACTTCCTGACAGTGTGTGATGTGTCTGATAAAGGAACAAACTGGAGCCATATTTCAAGGAATCATGTGGCTCATGAGCTGGATGCTTCTTCATGTATGACCAAGTCGATGGCAGTGCTCCATCTGTAA 1743 0.4509 MISERLSGETSLRRDLEALSVSQRLVRSVSQKLRKKNNRSEGEEEEDGRGVSLRCLVLYGRGGGCKVGAETSDDFGDPSSRRRSSASDDGKGYKTICGVEETGVDCFSYGVKDKFWKRNNRKDLEVEELQQNSRMHLFLPDDILELCLVRLPLTSLMNARLVCKKWRYLTTTPRFMQMRKEGLHQNPWLFLFGAVKDGYCSGEIHALDVSLDEWHRVDADILKGRFLFSVASIQDSVYIVGGCSSLTSFGRVDRSSFKTHKGVLVFSALTKSWRKVASMKHARSSPILGISEVGSDCLIVRSQQNRQDRRFPRTRIGGVSDVYEDPHRLSLRREPGSGFNENEISSLPHRKQGKFVRQKGDLSNTTDCRRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGIVCSGVVCNGMFYVYSETDKLAGYDIERGFWVGIQITPSPPRVHEYYPKLVSCNGRLFMLSVSWCEGDGQIGRRNKAVRKLWELDLMYLTWTEVSIHPDAPMDWNAAFVADRNLIFGVEMFKIFGQVLDFLTVCDVSDKGTNWSHISRNHVAHELDASSCMTKSMAVLHL* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0079 580 Pfam F-box domain 139 175 IPR001810 GO:0005515
Vvi18g0079 580 Pfam Kelch motif 227 283 - -
Vvi18g0079 580 ProSiteProfiles F-box domain profile. 133 178 IPR001810 GO:0005515
Vvi18g0079 580 CDD F-box_AtFBW1-like 138 175 - -
Vvi18g0079 580 SUPERFAMILY Kelch motif 186 289 IPR015915 GO:0005515
Vvi18g0079 580 MobiDBLite consensus disorder prediction 70 91 - -
Vvi18g0079 580 Gene3D - 138 174 - -
Vvi18g0079 580 Gene3D - 175 565 IPR015915 GO:0005515
Vvi18g0079 580 SMART fbox_2 139 179 IPR001810 GO:0005515
Vvi18g0079 580 Pfam Kelch motif 373 404 IPR006652 GO:0005515
Vvi18g0079 580 SUPERFAMILY Kelch motif 373 527 IPR015915 GO:0005515
Vvi18g0079 580 MobiDBLite consensus disorder prediction 75 89 - -
Vvi18g0079 580 SUPERFAMILY F-box domain 137 199 IPR036047 GO:0005515
Vvi18g0079 580 Coils Coil 26 46 - -
Vvi18g0079 580 FunFam F-box/kelch-repeat protein At5g42360 364 568 - -
Vvi18g0079 580 PANTHER OS09G0555300 PROTEIN 1 580 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0079 - - vvi:100247861 1164.06