Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0075 ATGGCTCCCACTTCACTACTTCTCCTGCCACTTCTCCTCCTTCTCTGCCTATTTCCGGCGGTTTCCTCCGTCGGCGTAAACTACGGCACTCTCGGAAACAACCTCCCTCCGCCCAAGAAGGTGGCTCAGCTACTCCAATCCACTCTCATCGACAAGGTCAAGATCTACGACACAAACCCAGAAATCCTAGAGGCCTTTTCCAACACAGGCATAGACCTCATCGTCGCCGTCGAAAATTACCACGTCTCCAACATCAGCTCCGATGTGGCCGCCGCCGACGAGTGGTTCGCCACCCGCGTCGCGCCCTTCATTCCCGCCACTTCCATCGTCGCCATTGCAGTGGGTAATGAGTATTTGACCACTGATACTGACCACTTGGCCCTTAATGCCCTGGTTCAAGCAATGCAGAACCTTCATGGAGTCCTACTAGCTCGTGGACTCGACCGGAAAATCAAGGTCACCACCCCACATAGTATGGCTGTGCTCGCTTCTTCGTTTCCTCCTTCAGCTTCCACCTTCGCCCTGGAACTCATCCCAACCATGACCTCCATTGTTGGGTTCATAGCTGATACTGGTGCGCCATTCATGATCAACGCCTACCCATATTTTGCCTACAGAGACAATCCGGGAAAAATCGATCTGGAATACGCATTGCTCGGGAACACAACTGGGGTACGCGACCCAAAGGGGTTTGTGTATAACAACATGCTCGATGCCCAAATCGACGCCGTCCGATCAGCCATCAACGCTCTGGGTTTCGGAAATCGGACCATAGAGATCACCGTATCGGAATCCGGGTGGCCGTCGAAGGGTGAGGCTGGGGACTCCGCGGCCACACCGGAAAACGCAAAAAAATACAATACCAGACTGATCGAACGTGGGCAGTCAGATAAAGGCACACCCATGAGGCCGAAGGACAAGGTGGAGGTGTTTGTGTTCGCTTTGTTCAATGAGAACAAAAAGGGAGGTGGAGTGAGTGAGAGAAACTTTGGGATTTTGAACGGCGACGGGTCTAAGGTATATGAGATAGATTTGAGCTGTAAATTCTGCAGCGGCAATGGAGGTGCGGTGGGGTTCGGTGAGAAAGTAGCGAACGCAGCGAGGGGTCCTTCGGTTTGGTGCGTAGCAAAGCCCCATGCAGATGAGAAGGTGCTGCAGGCGGTGCTGGACTTCTGCTGTGGGCCTGGTGGGGTGGACTGCAGAGAGATATATGGAAGTGGGGATTGTTTTGAGCCGAATAAGCTTCATGCACATTCATCATACGCCATGAATGCGTATTATCAGATGCATGGGAGGAACTACTGGAACTGTGATTTCAAAGGCGCTGGCCTCGTTACCTTCGGTGATCCAAGTTATGGGAGATGCCGATATCCTCAACAGTGA 1383 0.5271 MAPTSLLLLPLLLLLCLFPAVSSVGVNYGTLGNNLPPPKKVAQLLQSTLIDKVKIYDTNPEILEAFSNTGIDLIVAVENYHVSNISSDVAAADEWFATRVAPFIPATSIVAIAVGNEYLTTDTDHLALNALVQAMQNLHGVLLARGLDRKIKVTTPHSMAVLASSFPPSASTFALELIPTMTSIVGFIADTGAPFMINAYPYFAYRDNPGKIDLEYALLGNTTGVRDPKGFVYNNMLDAQIDAVRSAINALGFGNRTIEITVSESGWPSKGEAGDSAATPENAKKYNTRLIERGQSDKGTPMRPKDKVEVFVFALFNENKKGGGVSERNFGILNGDGSKVYEIDLSCKFCSGNGGAVGFGEKVANAARGPSVWCVAKPHADEKVLQAVLDFCCGPGGVDCREIYGSGDCFEPNKLHAHSSYAMNAYYQMHGRNYWNCDFKGAGLVTFGDPSYGRCRYPQQ* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0075 460 Gene3D - 367 455 - -
Vvi18g0075 460 Pfam X8 domain 373 443 IPR012946 -
Vvi18g0075 460 Gene3D Glycosidases 22 351 - -
Vvi18g0075 460 SMART X8_cls 372 457 IPR012946 -
Vvi18g0075 460 FunFam glucan endo-1,3-beta-glucosidase 7 368 458 - -
Vvi18g0075 460 Pfam Glycosyl hydrolases family 17 24 344 IPR000490 GO:0004553|GO:0005975
Vvi18g0075 460 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 16 445 IPR044965 GO:0004553|GO:0005975
Vvi18g0075 460 SUPERFAMILY (Trans)glycosidases 24 343 IPR017853 -
Vvi18g0075 460 FunFam Glucan endo-1,3-beta-glucosidase 14 22 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0075 Vvi-Chr18 694337 696034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0075 24 458 Glycoside Hydrolase AT4G26830 42.334 1.88e-119 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0075 - - vvi:100252971 917.146