Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0073 ATGGCCTCTCATGCAGCTCTGGCTTCTTCAAGAATCCCAACAACCAACACCAGGCACCCCTCCAAGGCCTCTCACTCTTTTCCCACTCAGTTTTTCGCCAAGAGGCTGGAAGTGGCTGAGTTCTCTGGGCTTAGATCCGGTGGGTGTGTGACCTTTGCCAAGAATGCTAGAGAGCCTTCCTTCTTTGATGTTGTGGCTTCCCAACTTACTCCCAAGGCTGGAGGGCCAGCTCCAGTTAGGGGAGAAACAGTGGCCAAATTGAAGGTGGCGATCAATGGATTCGGGCGCATTGGTAGGAACTTCCTCCGGTGCTGGCATGGGCGGAAAGACTCTCCCCTCGATGTTATTGTCGTCAATGACAGTGGTGGTGTGAAGAACGCTTCGCACTTGCTGAAATATGACTCTATGCTTGGAACATTCAAAGCTGAAGTGAAGATAGTGGACAACGAGACCATCAGCGTGGATGGCAAGCCCATCAAGGTCGTCTCCAGCAGGGACCCCCTGAAGCTCCCATGGGCTGAGCTCGGTATCGACATTGTTATTGAGGGGACCGGAGTCTTCGTGGACGGCCCTGGTGCTGGAAAACACATCCAAGCTGGTGCCAAGAAGGTTATTATCACGGCACCAGCCAAAGGGGCTGATATTCCAACCTATGTTGTTGGAGTAAATGAAGGAGATTACTCCCATGAGGTTTCCAACATTGTGAGCAATGCCTCCTGCACTACAAATTGCCTGGCTCCTTTTGTGAAGATCCTGGATGAAGAATTGGGCATTGTCAAAGGAACAATGACTACCACCCATTCCTACACTGGAGACCAGAGGCTTTTGGATGCTTCACACAGGGACTTGAGGAGAGCCAGGGCAGCAGCATTGAACATAGTCCCGACAAGCACTGGCGCAGCCAAGGCCGTGTCCCTTGTGCTGCCCCAGCTCAAGGGCAAGCTCAATGGCATTGCCCTCAGGGTGCCCACCCCTAATGTATCAGTTGTTGACCTTGTCGTGAATGTTGAGAAGAAAGGAATCACAGCTGAGGATGTCAATGCCGCCTTCAGGAAGGCAGCTGACGGACCATTGAAGGGCATTCTGGCTGTCTGTGACGTCCCCCTCGTCTCAGTAGACTTCAAGTGCTCTGACGTTTCTTCCACCATTGATGCATCACTCACCATGGTCATGGGAGATGATATGGTCAAGGTGGTCGCCTGGTACGACAATGAATGGGGTTACAGCCAACGGGTGGTCGATTTGGCTCATCTGGTGGCAGCCAAGTGGCCAGGTTTTGCTGCAGAAGGAAGTGGAGACCCATTGGAGGATTTCTGCAAGACAAACCCTGCTGATGAGGAGTGCAAAGTCTATGAAGCTTAA 1362 0.522 MASHAALASSRIPTTNTRHPSKASHSFPTQFFAKRLEVAEFSGLRSGGCVTFAKNAREPSFFDVVASQLTPKAGGPAPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIVVNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYSHEVSNIVSNASCTTNCLAPFVKILDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFKCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAKWPGFAAEGSGDPLEDFCKTNPADEECKVYEA* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0073 453 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 88 414 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Vvi18g0073 453 Gene3D Dihydrodipicolinate Reductase; domain 2 239 404 - -
Vvi18g0073 453 Gene3D - 88 416 - -
Vvi18g0073 453 SMART gp_dh_n_7 87 240 IPR020828 GO:0051287
Vvi18g0073 453 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 245 402 IPR020829 GO:0016620
Vvi18g0073 453 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 238 245 IPR020830 GO:0016620
Vvi18g0073 453 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 85 423 IPR020831 GO:0016620
Vvi18g0073 453 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 88 189 IPR020828 GO:0051287
Vvi18g0073 453 MobiDBLite consensus disorder prediction 8 25 - -
Vvi18g0073 453 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 240 403 - -
Vvi18g0073 453 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 317 334 IPR020831 GO:0016620
Vvi18g0073 453 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 234 252 IPR020831 GO:0016620
Vvi18g0073 453 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 196 209 IPR020831 GO:0016620
Vvi18g0073 453 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 358 373 IPR020831 GO:0016620
Vvi18g0073 453 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 261 277 IPR020831 GO:0016620
Vvi18g0073 453 Pfam CP12 domain 431 452 - -
Vvi18g0073 453 FunFam Glyceraldehyde-3-phosphate dehydrogenase 87 247 - -
Vvi18g0073 453 FunFam Glyceraldehyde-3-phosphate dehydrogenase 239 404 - -
Vvi18g0073 453 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 86 256 IPR036291 -
Vvi18g0073 453 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0073 Vvi-Chr18 681331 684269 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0073 K05298 - vvi:100259814 862.062