Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0055 ATGGAAGAACATAGAAGCCCTTCACACACAAACCCAGCTGTTAATGCTTCCGGAAGCGCAAAGGAACGATCCAGTGGACCAGCTTTTGGTGGTGTCGACATTGGTGAGAGTGAAGGTGGATATTTCCTGAGAGTTGCCATGCCTGGAGCCATGAGGGATGAGGGTTCATTTAGTATTAGTAAAGATGGCACTGTTGATATACAAGGTATGATCAGATATGAGATTCCATCACAGGTGCCGAAGATGAAGGTCCAGCAGCTATATCCTCCTGGACCATTTGCTTTGTCTCTTAAACTGCCTGGACGTGTTGACCCTAGAATGTTCACTTGTAAACTAAGGTATGATGGCATCTTTGAGGTTGTGGTCATGAAACCTGGTTATTCTGATACGCCAGCACAGCCATCCTACCGGGAACGCAGCATGCCTGTAAATACATAG 438 0.4635 MEEHRSPSHTNPAVNASGSAKERSSGPAFGGVDIGESEGGYFLRVAMPGAMRDEGSFSISKDGTVDIQGMIRYEIPSQVPKMKVQQLYPPGPFALSLKLPGRVDPRMFTCKLRYDGIFEVVVMKPGYSDTPAQPSYRERSMPVNT* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0055 145 PANTHER INCREASED DNA METHYLATION 3 4 124 IPR039321 -
Vvi18g0055 145 Gene3D - 31 142 IPR008978 -
Vvi18g0055 145 MobiDBLite consensus disorder prediction 1 32 - -
Vvi18g0055 145 MobiDBLite consensus disorder prediction 8 22 - -
Vvi18g0055 145 SUPERFAMILY HSP20-like chaperones 29 125 IPR008978 -
Vvi18g0055 145 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 23 144 IPR002068 -
Vvi18g0055 145 CDD ACD_sHsps-like 33 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0055 Vvi-Chr18 575430 576933 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0055 - - vvi:100246177 298.13