Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0052 ATGCATTTGAGCGAGAACGAAGGCATTGAGGGCAGTACCTTCGTAGTGACCGGAGGTCTCGGCTTTGTCGGCGCCGCTCTTTGTCTTGAGCTCGTTCGCAGAGGTGCGCGCCAGATTCGGGCGATTGATTTGCGGAGCACTTCGCCTTGGTCCGATGATCTTGAGAACAAAGGAGTCCACTGCATCCAAGGGGATATCACTGTCAAAAAGGATGTTGAAAGAGCTTTACGTGGTGCAGATTGTGTATTCCACCTTGCTTCTTATGGTATGTCAGGGAAAGAAATGATCCAATATGGCCGTGTAGATGAGGTGAATATAAACGGAACTTGCCACATATTGGATGCTTGCATTGAATTTGGGATCAAAAGGCTTGTCTACACAAGCACATACAATGTTGTGTTTGGGGGAAAGGAGATTTTGAATGGCAATGAGGCCTTACCTTATTTTCCTTTGGATGATCATGTGGATTCTTACAGCCGAAGTAAATCTATAGCTGAACAGCTGGTTCTAAAGAACAATGGTCGTCCTTTTAAGAACAAGAGTGGGAAATGTCTTTATACCTGTGCAGTTCGTCCAGCAGCTATCTATGGGCCTGGTGAAGATAGGCACTTTCCCAGGATAATATCTCTGGCAAAGTTGGGTGTGCTGCCATTCACAATAGGTGAAGCAAATGTAAAAGGAGATTGGATTTATGTTGATAATCTTGTGCATGCACAAATATTGGCAAGCATGGGACTCTTAGATGACATTCCTGGGAGAGAGAAACGTCCAATAGCTGCTGGGCAGTCCTACTTCATAAATGATGGTTCTCCAGTAAACATTTATGAATTCCTCCGCCCTCTACTCAGAAGCCTGGAGTACGACCTGCCAAAGGCTTCGTTGCCTGTCCCTTATGCTCTTTTCATGTCTAGGATTAACTGCATGATCTATACGCTCTTATATCCATGGTTGAACCGATGGTGGCTTCCACAACCACTGATGCTTCCTGCTGAAGTATACAAGGTGGGTGTAACCCATTACTTCTCTTACCTCAAAGCTAAGGAGGAGCTTGGCTATGTTCCGCTGGTGAGTCCTCGAGAAGGAATGGCTGCAACCATCTCATACTGGCAAGAAAGGAAAAGAAGAAGCCTTGAAGGGCCTACACTTCAGACATGGTTATTTTGTATTATCGGAATGTTTGTTCTATTCTGTGCCGCTTACTTACCAGATATTGGGCCTGTGCCCATCTTCAGAGCAATCAGTCTTTTCTTCCTCCGCTCAATGGCGATAATAAGAGTGGTGTTTCTTCTAGCTACTGCAGCACATATTGGCGAGGCTGTATACGCATGGCACTTGGCCAAAAGGGTGGATCCAGCGAACGCAAGAGGATGGTTTTGGCAGACTTTTGCTCTTGGGATATTTTCACTCCGTTTCCTGCTGAAGAGGGCCAAGAAATAA 1437 0.4572 MHLSENEGIEGSTFVVTGGLGFVGAALCLELVRRGARQIRAIDLRSTSPWSDDLENKGVHCIQGDITVKKDVERALRGADCVFHLASYGMSGKEMIQYGRVDEVNINGTCHILDACIEFGIKRLVYTSTYNVVFGGKEILNGNEALPYFPLDDHVDSYSRSKSIAEQLVLKNNGRPFKNKSGKCLYTCAVRPAAIYGPGEDRHFPRIISLAKLGVLPFTIGEANVKGDWIYVDNLVHAQILASMGLLDDIPGREKRPIAAGQSYFINDGSPVNIYEFLRPLLRSLEYDLPKASLPVPYALFMSRINCMIYTLLYPWLNRWWLPQPLMLPAEVYKVGVTHYFSYLKAKEELGYVPLVSPREGMAATISYWQERKRRSLEGPTLQTWLFCIIGMFVLFCAAYLPDIGPVPIFRAISLFFLRSMAIIRVVFLLATAAHIGEAVYAWHLAKRVDPANARGWFWQTFALGIFSLRFLLKRAKK* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0052 478 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 13 371 - -
Vvi18g0052 478 FunFam Short-chain dehydrogenase/reductase family 42E member 1 3 375 - -
Vvi18g0052 478 Gene3D - 4 375 - -
Vvi18g0052 478 Pfam Transmembrane protein 254 387 473 IPR028110 -
Vvi18g0052 478 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 375 IPR036291 -
Vvi18g0052 478 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 15 295 IPR002225 GO:0003854|GO:0006694|GO:0016616
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0052 1 478 Lipid Metabolism Gene Families AT2G33630 73.431 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0052 - - vvi:100241063 974.541