Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0049 ATGGCGGCACAGTCGCCGATCAAAGACCCTATCGGAGCATCCACTGAAACCCTAACCCAACAACCTGATTCCTCTTCCTCCATCATTCCAACCGTCAAGTCTGAGATTCCGGTCGCCGCCTCCGCTTCCCCTTCAGTTGGGATTGTTCCCCGTGCTTCTGAACCGGAGACCATCAACATCCCCAGCTATTCCAGGTGGTTTTCGTGGAACAATGTCCACGAATGCGAGGTTCGGTTCCTTCCTGAGTTCTTCGACGCTCGGTCCCCGTCCAAGAACCCTAGGGTTTACAAGTATTACCGTAATTCGATAATCCTGTCCTTCAGACAAAACCCTTCGAGGAAGCTCACGTTTACGGATGTTCGGAAAATTCTTGTTGGAGATGTGGGATCCATTCGCAGGGTTTTTGATTTTCTGGAGGCTTGGGGTTTGATTAATTACTCCGGTTCTGCCTTGAAACAGCCGTTGAAATGGGAAGAGAAGGATAACAAGTCCGGTGGGGCGTCTTCGCATACCGGGGATGCTGGAGGAGGTGCTGTTGAATCTATTCCTAAGAGGAGATGGTGCAGCGGCTGCAAATCCCTCTGCAGCATTGCTTGTTTTGCCTGTGATAAGTTTGACTTGACTCTCTGTGCACGGTGCTATGTTCGTGGCAATTATCGGGTTGGGGTCAATTCTTCAGATTTTAGGCGAGTTGAAATCAGTGAAGACACAAAAGCAGGTTGGACTGACAAAGAAACTTTGCACCTTTTAGAAGCTGTCTTGCATTATGGTGATGACTGGAAGAAGGTTGCGGAGCATGTTGGTGGTAGAAATGAGAAAGAATGTGTTACTCATTTTATCAAGCTTTCTTTTGGGGAGCAATATCTTGGACATACAAGCTCTGGGGATGTTGATAACAAGTTTTCTCAAGCGAAGGACCAGAGTGATGCTGGATTTGGACAGGAAAATATTGGCACTTCTTCCGCAAGTAAAAAAATGCGACTCACGCCACTTTCTGATGCAAGCAACCCAATTATGGCTCAGGCTGCATTCTTGTCGGCTTTGGTGGGTGTAGAGGTTGCAGAAGCTGCTGCTCGAGCAGCTGTTGCATCTTTGTCAGATGTGGATCCTAGAAAAATGAAAGAGGGTCTTGGATCTTTTGCTAATGGTGCAAGAATACAAGACCCTAATGTGGAATCCAATGGCAACACCACCTCAAATGTGTTGGAAGGAGCTTATGTAGATGCAAAGTCACTGCTCGAGAGGGAAGAGCTGGATGTGGAGAGAGCAATTTCTGGCATTACTGAAGTGCAGATGAAGGAGATTCGGGATAAGATTGTTCATTTTGAGGAGTTTGAATTGCATATGGAGAAAGAGTGGCAACAGCTCCAACAAATGAAGAACCTACTCTTTGTTGATCAGCTCACCCTTCTGTTTCAAAAAGCTGCTGCACCAAAAACTGGAGAATTGATGGGGGGCGAGAATGTTAGAACAGATTGA 1479 0.4679 MAAQSPIKDPIGASTETLTQQPDSSSSIIPTVKSEIPVAASASPSVGIVPRASEPETINIPSYSRWFSWNNVHECEVRFLPEFFDARSPSKNPRVYKYYRNSIILSFRQNPSRKLTFTDVRKILVGDVGSIRRVFDFLEAWGLINYSGSALKQPLKWEEKDNKSGGASSHTGDAGGGAVESIPKRRWCSGCKSLCSIACFACDKFDLTLCARCYVRGNYRVGVNSSDFRRVEISEDTKAGWTDKETLHLLEAVLHYGDDWKKVAEHVGGRNEKECVTHFIKLSFGEQYLGHTSSGDVDNKFSQAKDQSDAGFGQENIGTSSASKKMRLTPLSDASNPIMAQAAFLSALVGVEVAEAAARAAVASLSDVDPRKMKEGLGSFANGARIQDPNVESNGNTTSNVLEGAYVDAKSLLEREELDVERAISGITEVQMKEIRDKIVHFEEFELHMEKEWQQLQQMKNLLFVDQLTLLFQKAAAPKTGELMGGENVRTD* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0049 492 PANTHER SWI/SNF COMPLEX-RELATED 26 467 - -
Vvi18g0049 492 FunFam SWI/SNF complex subunit SMARCC2 isoform c 64 150 - -
Vvi18g0049 492 SMART sant 237 285 IPR001005 -
Vvi18g0049 492 ProSiteProfiles SANT domain profile. 236 287 IPR017884 -
Vvi18g0049 492 SUPERFAMILY Homeodomain-like 238 293 IPR009057 -
Vvi18g0049 492 SUPERFAMILY Homeodomain-like 54 159 IPR009057 -
Vvi18g0049 492 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 286 IPR017930 -
Vvi18g0049 492 Gene3D - 237 285 - -
Vvi18g0049 492 Pfam SWIRM domain 61 146 IPR007526 GO:0005515
Vvi18g0049 492 ProSiteProfiles Myb-like domain profile. 233 283 IPR001005 -
Vvi18g0049 492 CDD SANT 241 282 IPR001005 -
Vvi18g0049 492 Pfam SWIRM-associated region 1 407 476 IPR032451 -
Vvi18g0049 492 Gene3D - 64 149 IPR036388 -
Vvi18g0049 492 MobiDBLite consensus disorder prediction 160 179 - -
Vvi18g0049 492 FunFam SWI/SNF complex subunit SMARCC2 isoform C 236 287 - -
Vvi18g0049 492 MobiDBLite consensus disorder prediction 10 28 - -
Vvi18g0049 492 ProSiteProfiles SWIRM domain profile. 58 155 IPR007526 GO:0005515
Vvi18g0049 492 Pfam Myb-like DNA-binding domain 241 281 IPR001005 -
Vvi18g0049 492 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0049 Vvi-Chr18 532123 535425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0049 163 308 EF-hand Containing Proteins AT3G07740 29.518 1.17e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0049 K11649 - vvi:100258194 972.23