Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0043 ATGGATGTTCGCCGTCGGCCTCCTAGGCCACCGCGTGCGACGGCGGATGCCACTCTTGAAAGTGATCGGCACCACCGGCTGAAGCCGACGGGGGCCGTGGACGGGCCACCTTCGCCTCCGACTCCAAAAGCCTCGGATGCACTGCCTCTTCCTCTCTACCTCACCAACGGCATTTTCTTCACGCTCTTTTTCTCTGTCGCGTACTACCTCCTCCACCGGTGGCGCGACAAGATCCGAACGCACACTCCGCTCCACGTCGTTACTCTCTCCGAAATCGCCGCTATTGTTTCTCTGATCGCATCCTTCATCTATCTCCTAGGTTTCTTCGGCATCGATTTTGTACAATCTTTCATTTCGCGTGCTTCTCACGACGCCTGGGACGTGGACGACGATGCTCCTAATCATTTCATCATCGATGAAGATCGCCGCCGCGGGCCGTGCCCTGCCTCCATAGAATGTCCCGTGCCTCCGATCACCGCCATTGCATCTCCGTCTAAAATGGTAGATCCGGCGCCGGTTAATTTGCCCGAAGAGGACGAGGATATCGTTAAATTAGTAGTTTCCGGGACGATTCCGTCGTACTCGCTCGAATCGAAGCTCGGAGACTGTAAGCGCGCGGCGTCGATTCGCCGTGAGGCGCTGCAGAGACTGACAGGCAAGTCGCTTCTGGAACTGCCGTTTGAAGGATTTGATTACCAAGCAATTTTAGGGCAGTGCTGTGAGATGCCAGTCGGATACGTGCAAATTCCCGTGGGGATTGCCGGACCGTTGTTACTTGACGGGTTCGAGTATTCGGTGCCGATGGCGACGACGGAAGGGTGTTTGGTAGCCAGTACCAACAGAGGTTGTAAGGCGATCTATGTGTCTGGTGGAGCAACGAGCATGGTGTTGAGAGATGGGATGACGAGAGCCCCAGTGGTGAGGTTCGCGACAGCAAAGAGGGCTGCAGAATTGAAGTTTTTCTTGGAGAATCCGGAAAATTTCGAGACTTTGTCAGTCATTTTTAACAGATCGAGTAGATTTGCAAGGCTGCAAAGTATTCAATGTGCTATGGCGGGGAAGAATCTTTACATAAGATTTAGCTGCAGCACTGGTGATGCAATGGGCATGAACATGGTTTCGAAAGGGGTTCAAAATGTCCTGGATTTCCTTCAAAATGACTTCCCAGACATGGATGTTATTGGCATCTCTGGAAATTTTTGTTCAGACAAGAAACCAGCTGCTGTAAACTGGATTGAAGGGCGTGGTAAGTCTGTGGTTTGTGAGGCAGTCATCAAGGAGGATGTGGTAAGGAAGGTGTTGAAAACAAACATAGCGGCCCTGGTAGAGCTTAACATGCTCAAGAACCTTGCTGGTTCTGCAGTTGCTGGTGCTCTGGGTGGATTTAATGCCCATGCTGGCAACATTGTGTCTGCAATATTTATAGCCACTGGCCAAGATCCGGCCCAAAATGTTGAGAGTTGCCACTGCATTACAATGATGGAAGCTGTTAATGATGGGAAGGATCTTCACATCTCTGTGACCATGCCTTCTGTCGAGGTGGGAACAGTTGGAGGTGGGACTCAACTTCCATCTCAATCTGCTTGTCTAAACCTACTGGGCGTAAAGGGTGCAAGCAAAGAGTCACCAGGATCAAACTCAAAGCTGTTGGCCACCATCATAGCCGGTTCAGTTTTGGCCGGGGAGCTCTCCTTAATGTCTGCCATTGCAGCCGGACAGCTTGTCAAGAGCCACATGAAATACAATAGATCCAGCAAAGACGTGTCCAAAGTTGCCTCTTAG 1782 0.5129 MDVRRRPPRPPRATADATLESDRHHRLKPTGAVDGPPSPPTPKASDALPLPLYLTNGIFFTLFFSVAYYLLHRWRDKIRTHTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRASHDAWDVDDDAPNHFIIDEDRRRGPCPASIECPVPPITAIASPSKMVDPAPVNLPEEDEDIVKLVVSGTIPSYSLESKLGDCKRAASIRREALQRLTGKSLLELPFEGFDYQAILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYVSGGATSMVLRDGMTRAPVVRFATAKRAAELKFFLENPENFETLSVIFNRSSRFARLQSIQCAMAGKNLYIRFSCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAVIKEDVVRKVLKTNIAALVELNMLKNLAGSAVAGALGGFNAHAGNIVSAIFIATGQDPAQNVESCHCITMMEAVNDGKDLHISVTMPSVEVGTVGGGTQLPSQSACLNLLGVKGASKESPGSNSKLLATIIAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDVSKVAS* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0043 593 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 300 416 - -
Vvi18g0043 593 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 176 572 IPR009029 GO:0015936|GO:0016616
Vvi18g0043 593 Pfam Hydroxymethylglutaryl-coenzyme A reductase 207 583 IPR002202 GO:0004420|GO:0015936
Vvi18g0043 593 Gene3D - 300 416 IPR009023 -
Vvi18g0043 593 Gene3D - 250 570 IPR023074 GO:0004420
Vvi18g0043 593 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 405 578 - -
Vvi18g0043 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 502 523 IPR002202 GO:0004420|GO:0015936
Vvi18g0043 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 397 422 IPR002202 GO:0004420|GO:0015936
Vvi18g0043 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 448 474 IPR002202 GO:0004420|GO:0015936
Vvi18g0043 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 266 286 IPR002202 GO:0004420|GO:0015936
Vvi18g0043 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 239 260 IPR002202 GO:0004420|GO:0015936
Vvi18g0043 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 357 375 IPR002202 GO:0004420|GO:0015936
Vvi18g0043 593 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 359 373 IPR023076 GO:0004420
Vvi18g0043 593 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 175 249 - -
Vvi18g0043 593 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 179 583 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vvi18g0043 593 MobiDBLite consensus disorder prediction 1 43 - -
Vvi18g0043 593 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 568 581 IPR023076 GO:0004420
Vvi18g0043 593 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 42 587 IPR002202 GO:0004420|GO:0015936
Vvi18g0043 593 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 300 416 IPR009023 -
Vvi18g0043 593 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 179 583 IPR002202 GO:0004420|GO:0015936
Vvi18g0043 593 CDD HMG-CoA_reductase_classI 180 583 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vvi18g0043 593 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 514 521 IPR023076 GO:0004420
Vvi18g0043 593 Gene3D - 176 249 IPR023282 GO:0004420
Vvi18g0043 593 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0043 Vvi-Chr18 494573 498105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0043 1 589 Lipid Metabolism Gene Families AT1G76490 75.208 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0043 K00021 - vvi:100265082 1157.13