Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0018 ATGGAAGCACAGGAAGAGGAAGGGAAAAATGACCATGTCTTAAGGAAGCTACAAGAGTCTGTGGATTCCAATCCTGATGACGCCTCCCTTCATTTTAATCTCGGGGTCTTCTTGTGGGAAAAGGAGGAACAAGAGTGGAAGGAAAAAGCTGCGGAGCATTTTGTAAGATCAGCCAAATTAAATCCGCAGAATGGGGACGCATTCAGATATTTGGGGCATTATTACGCAAGGGTATCCGTTGATACTCAGAGAGCTTTCAAGTGTTACCAGAGATCGGTCACCCTTAATCCCAATGATTCCGATTCTGGGGAAGCGTTGTGTGATTTGTTGGACCTAGGAGGAAAGGAGACTTTAGAGATTGCGGTCTGCAGGGAAGCATCAGAGAAGTCCCCTAGGGCTTTTTGGGCTTTTCGAAGATTGGGTTACCTGCAGCTCCATCAAAATAAATGGTCTGAAGCAGTACAGAGTCTTCAACATGCCATTCGAGGGTATCCTAGCTGTGCTGATTTGTGGGAAGCTCTGGGGCTTGCCTACCAGCGATTGGGTATGTTTACTGCAGCTATAAAGTCATATGGGAGAGTCATTGAATTGGAGGATTCCAGAATCTTCGCATTGGTTGAGAGTGGAAACATCTTTTTGATGCTTGGTTCCTTTAGAAAGGGTATCGAGCAATTTCGGCAAGCTTTGGAGATCTCACCTAAAAGTGTATCTGCACACTATGGTCTTGCTTCTGGGCTGCTTAGTTTGTCAAAGGAATGTACCAATTTGGGTGCTTTTAGATGGGGAACTTCACTTTTAGAGGAAGCATCTAAAGTTGCAAAATCAACTACCTGTTTGGCTGGAAATGTTTCATGTATTTGGAAATTGCATGGGGATATTCAGCTTGCATATGCAAAATGTTTACCGTGGTTGGAGGAAAACTGGAACCTAGAGATTGATGAGGAAGCTTTCAGTAACTCCATTCTTAATTGGAAGCGATCCTGCTGTTTGTCTGCGATATCTGCCAATTATTCTTACCAGAGGGCTTTGCACTTAGCCCCATGGCAAGCTAATATCTATACTGACATTGCAATAAGTTCAGATCTCATTTGCTCTTTGAAGGAGGATGATAAACATAACCCAAATTCTTGGCAGCTACCTGAAAAAATGTCTTTGGGAGGCTTGTTACTTGAGGGTGACAATAATGAGTTCTGGGTGACATTGGGATTTGTATCTGGTCATAATGCACTGAAGCAACATGCTTTTATCAGGGGACTGCAGTTAGATGTATCTTTAGCTGTTGCATGGGCATGCCTTGGGAAGCTTTATAGAAAAGAGGGCGAGAAGCAATTGGCAAGGCAGGCATTTGATTCTGCTAGAAGTATAGATCCTTCACTTGCATTACCATGGGCAGGCATGTCAGCTGATACACATGCCAGGGATCCCACAACAGATGAGGCTTATGAGAGTTGTTTACGTGCTGTGCAGATATTGCCCGTTGCAGAGTTTCAAATTGGCCTTGCAAAGCTTGCTCTTCTTTCAGGTCACCTTTCATCCTCACAGGTCTTTGGAGCCATCCAACAGGCTGTGCAGCATGCACCTTACTATCCAGAATCCCATAATTTGAATGGACTGGTTTGTGAGGCACGGTGTGATTATCAGTCTGCTGTTGCTTCTTATAGGCTAGCACGCTGCGCAATCAACACCTTTTCAGGCTCCATATTGAAATCCCATTTGAGAGACATATCATTTAATATTGCAAGATCACTCAGTAAAGCAGGGAATGCCCTTGATGCTGTTCAAGAATGTGAAGATTTGAAGAAAGAAGGTCTGCTTGATGCACAAGGTTTGCAAATATATGCTATCTCCTTATGGCAAATTGGTGAAAATGACCTTGCCCTGTCTGTGGCAAGGGATCTAGCTGCAAGTGTTTCTGCCATGGAACAGGCTTCTAGGGCCACTTCTGTTAGTTTCATATGTAAATTTCTGTATAAAATATCTGGGCAGGAATCAGCAATAATAAGCATTTTGAAAATGCCGAAAGAACTATTTCAGAATTCAAAGATTAGTTTTGTTGTGTCCGCCATTGACGCTCTTGATGAAAGTAATAAGCTGGAATCAGTTGTTTCAAGCAGTCGATACTTTCTTGCATCTCATGAAGAGATCGCTAGAATGCACTGTTTAGTAGCACTTGGTAAACTGGTCAAACAAGGATCAGAGCACTGCCTTGGATTTGAAAATGGGGTTCATCACCTTAGAAAAGCTCTTCACATGTTCCCTAACAGTGTTTTGATAAGGAATCTTCTTGGTTATCTTTTACTATCCTCTCAAGAAGGGGAAGATGCTCATAGTGCTAGTAGGTGCTGTATTGTAGACCCCTCCCACTCTCCCAATAAAGAAGGTTCAAAGTCAGCATTTGAGATCCTTGGTGCTGGAGCAGTTGCTTGCTTTGCCAGTGGCATGAGCAACCAGAAATTCTCTTTCCCAACATGCAGATACCGGTGCATGAGTGGACCAGGAGCAATACAACAGCTGCAGAAGTGGTTGCATAGAGAACCTTGGAACCATAATGCACGTTACTTGTTGATACTTAATTTTCTACAGAAGGCACGTGAAGAGAGATTTCCAAGACATCTTTGTACAATAATTGAGCGGCTAAATTTTGTGGCTATTTCCAACCACTTATATTTAAAGAAGGATACATGTTGTCAATACCAAAAGTTCCAGCTGCTACTTTGTGCTTCTGAAATCAGTTTGCAAGGTGGTGATCATCTTGGCTGTGTCAACCATGCTGAAAATGCTTCAACACTCTTGCTTCCTGATTGCTACCTCTTTTTTGCGCATTTGCAACTATGCCGTGCTTATGTTGCAAAAGATGATTTTAAAAATCTACGGAAAGAGTATATAAAATGCTTGGAGCTTAAAACAGATTATTGTATCGGTTGGCTATGTCTTAAATTCATGGATCCTCACCATGAACTACAAAATGATTTGAGCATCTCAGAGTTGAACTTCAAGGAGTGCTCAAAGGAGAGAAAGAGTTCATGTAACAAGTGGATGGCTTTATTTGATTTGCTGCAGGGTCTGATTTCTGTTCAGAATCAAGATTTTCTCTGCGCAGAAGAATTTCTTGCGCAAGCTTGTTCGTTGTCAGATACTGAGAGCTGCATCTTCCTATGTCATGGTGTCATTTGTATGGAGCTTGCCAGGCAGCAGTGTGATTCCCAGTATTTGTCACATGCTATAAAGAGTCTCATGAAAGCCCAAGAGATTTCTCTGATTCCCTTACCTTTTGTCCCAACATTGCTAGCTCAAGCAGAGGCAAGCAGAGGCTCTAAAGCAAAGTGGGAGAAAAATCTCTGTCTTGAATGGTTTTCTTGGCCACCAGAGGTGAGGCCTGCTGAACTCTTTCTTCAAATGCATTTGCTTGCAAGACACTCCAAATCCGGGTCTGAGTCATCCTCCTGTGTGGAGCCCCATCAGAGCCAACAGAGGTGGGTTCTCCGGGCAATCCATTTGAACCCTTCTTGTTTGAGATATTGGAAGGTTTTGCAGAAGTTAATGCAGTGA 3549 0.4289 MEAQEEEGKNDHVLRKLQESVDSNPDDASLHFNLGVFLWEKEEQEWKEKAAEHFVRSAKLNPQNGDAFRYLGHYYARVSVDTQRAFKCYQRSVTLNPNDSDSGEALCDLLDLGGKETLEIAVCREASEKSPRAFWAFRRLGYLQLHQNKWSEAVQSLQHAIRGYPSCADLWEALGLAYQRLGMFTAAIKSYGRVIELEDSRIFALVESGNIFLMLGSFRKGIEQFRQALEISPKSVSAHYGLASGLLSLSKECTNLGAFRWGTSLLEEASKVAKSTTCLAGNVSCIWKLHGDIQLAYAKCLPWLEENWNLEIDEEAFSNSILNWKRSCCLSAISANYSYQRALHLAPWQANIYTDIAISSDLICSLKEDDKHNPNSWQLPEKMSLGGLLLEGDNNEFWVTLGFVSGHNALKQHAFIRGLQLDVSLAVAWACLGKLYRKEGEKQLARQAFDSARSIDPSLALPWAGMSADTHARDPTTDEAYESCLRAVQILPVAEFQIGLAKLALLSGHLSSSQVFGAIQQAVQHAPYYPESHNLNGLVCEARCDYQSAVASYRLARCAINTFSGSILKSHLRDISFNIARSLSKAGNALDAVQECEDLKKEGLLDAQGLQIYAISLWQIGENDLALSVARDLAASVSAMEQASRATSVSFICKFLYKISGQESAIISILKMPKELFQNSKISFVVSAIDALDESNKLESVVSSSRYFLASHEEIARMHCLVALGKLVKQGSEHCLGFENGVHHLRKALHMFPNSVLIRNLLGYLLLSSQEGEDAHSASRCCIVDPSHSPNKEGSKSAFEILGAGAVACFASGMSNQKFSFPTCRYRCMSGPGAIQQLQKWLHREPWNHNARYLLILNFLQKAREERFPRHLCTIIERLNFVAISNHLYLKKDTCCQYQKFQLLLCASEISLQGGDHLGCVNHAENASTLLLPDCYLFFAHLQLCRAYVAKDDFKNLRKEYIKCLELKTDYCIGWLCLKFMDPHHELQNDLSISELNFKECSKERKSSCNKWMALFDLLQGLISVQNQDFLCAEEFLAQACSLSDTESCIFLCHGVICMELARQQCDSQYLSHAIKSLMKAQEISLIPLPFVPTLLAQAEASRGSKAKWEKNLCLEWFSWPPEVRPAELFLQMHLLARHSKSGSESSSCVEPHQSQQRWVLRAIHLNPSCLRYWKVLQKLMQ* 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0018 1182 SUPERFAMILY HCP-like 8 243 - -
Vvi18g0018 1182 Pfam Tetratricopeptide repeat 140 193 - -
Vvi18g0018 1182 PANTHER SUPERKILLER 3 PROTEIN-RELATED 6 1083 IPR039226 GO:0006401|GO:0055087
Vvi18g0018 1182 MobiDBLite consensus disorder prediction 1 22 - -
Vvi18g0018 1182 SUPERFAMILY TPR-like 391 556 IPR011990 GO:0005515
Vvi18g0018 1182 Gene3D Tetratricopeptide repeat domain 333 493 IPR011990 GO:0005515
Vvi18g0018 1182 ProSiteProfiles TPR repeat profile. 426 459 IPR019734 GO:0005515
Vvi18g0018 1182 SMART tpr_5 530 563 IPR019734 GO:0005515
Vvi18g0018 1182 SMART tpr_5 65 99 IPR019734 GO:0005515
Vvi18g0018 1182 SMART tpr_5 134 167 IPR019734 GO:0005515
Vvi18g0018 1182 SMART tpr_5 426 459 IPR019734 GO:0005515
Vvi18g0018 1182 SMART tpr_5 202 235 IPR019734 GO:0005515
Vvi18g0018 1182 SMART tpr_5 168 201 IPR019734 GO:0005515
Vvi18g0018 1182 SMART tpr_5 28 64 IPR019734 GO:0005515
Vvi18g0018 1182 SUPERFAMILY TPR-like 519 629 IPR011990 GO:0005515
Vvi18g0018 1182 ProSiteProfiles TPR repeat profile. 202 235 IPR019734 GO:0005515
Vvi18g0018 1182 Gene3D Tetratricopeptide repeat domain 520 1113 IPR011990 GO:0005515
Vvi18g0018 1182 Gene3D Tetratricopeptide repeat domain 1 278 IPR011990 GO:0005515
Vvi18g0018 1182 ProSiteProfiles TPR repeat profile. 168 201 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0018 Vvi-Chr18 263984 297625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0018 49 245 Glycosyltransferase AT3G04240 23.377 1.20e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0018 K12600 - vvi:100259801 2378.98